Training Signaling Pathway Maps to Biochemical Data with Constrained Fuzzy Logic: Quantitative Analysis of Liver Cell Responses to Inflammatory Stimuli. - Melody K. Morris; Julio Saez-Rodriguez; David C. Clarke; Peter K. Sorger; Douglas A. Lauffenburger (PLoS Comput. Biol., 2011)

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling. - Shao-Shan Carol Huang; David C. Clarke; Sara J. C. Gosline; Adam Labadorf; Candace R. Chouinard; William Gordon; Douglas A. Lauffenburger; Ernest Fraenkel (PLoS Comput. Biol., 2013)

ADP is the dominant controller of AMP-activated protein kinase activity dynamics in skeletal muscle during exercise. - Ian F. Coccimiglio; David C. Clarke (PLoS Comput. Biol., 2020)

A hydraulic model outperforms work-balance models for predicting recovery kinetics from intermittent exercise. - Fabian Clemens Weigend; David C. Clarke; Oliver Obst; Jason Siegler (Ann. Oper. Res., 2023)