Information and its Role in Nature. J. G. Roederer. (2005, Springer.) Hardcover, 235 pages, ISBN 3-540-23075-0. - David C. Krakauer (Artif. Life, 2007)

Geometric robustness theory and biological networks. - Nihat Ay; David C. Krakauer (Theory Biosci., 2007)

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution. - Elhanan Borenstein; David C. Krakauer (PLoS Comput. Biol., 2008)

Defining genes: a computational framework. - Peter F. Stadler; Sonja J. Prohaska; Christian V. Forst; David C. Krakauer (Theory Biosci., 2009)

Intelligent Data Analysis of Intelligent Systems. - David C. Krakauer; Jessica C. Flack; Simon DeDeo; J. Doyne Farmer; Daniel N. Rockmore (IDA, 2010)

Inductive Game Theory and the Dynamics of Animal Conflict. - Simon DeDeo; David C. Krakauer; Jessica C. Flack (PLoS Comput. Biol., 2010)

A Family of Algorithms for Computing Consensus about Node State from Network Data. - Eleanor R. Brush; David C. Krakauer; Jessica C. Flack (PLoS Comput. Biol., 2013)

Capturing collective conflict dynamics with sparse social circuits. - Edward Lee; Bryan C. Daniels; Jessica C. Flack; David C. Krakauer (CoRR, 2014)

Design specifications for cellular regulation. - David C. Krakauer; Lydia Müller; Sonja J. Prohaska; Peter F. Stadler (Theory Biosci., 2016)

The cultural evolution of national constitutions. - Daniel N. Rockmore; Chen Fang; Nicholas J. Foti; Tom Ginsburg; David C. Krakauer (J. Assoc. Inf. Sci. Technol., 2018)

Collective Computation in Animal Fission-Fusion Dynamics. - Gabriel Ramos-Fernandez; Sandra E. Smith Aguilar; David C. Krakauer; Jessica C. Flack (Frontiers Robotics AI, 2020)

The information theory of individuality. - David C. Krakauer; Nils Bertschinger; Eckehard Olbrich; Jessica C. Flack; Nihat Ay (Theory Biosci., 2020)

The Debate Over Understanding in AI's Large Language Models. - Melanie Mitchell; David C. Krakauer (CoRR, 2022)

Large Language Models and Emergence: A Complex Systems Perspective. - David C. Krakauer; John W. Krakauer; Melanie Mitchell (CoRR, 2025)