CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins. - David Couvin; Aude Bernheim; Claire Toffano-Nioche; Marie Touchon; Juraj Michalik; Bertrand Néron; Eduardo P. C. Rocha; Gilles Vergnaud; Daniel Gautheret; Christine Pourcel (Nucleic Acids Res., 2018)

Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families. - David Couvin; Wilfried Segretier; Erick Stattner; Nalin Rastogi (Database J. Biol. Databases Curation, 2020)

CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers. - Christine Pourcel; Marie Touchon; Nicolas Villeriot; Jean-Philippe Vernadet; David Couvin; Claire Toffano-Nioche; Gilles Vergnaud (Nucleic Acids Res., 2020)

SITVITBovis - a publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis. - David Couvin; Iñaki Cervera-Marzal; Audrey David; Yann Reynaud; Nalin Rastogi (Database J. Biol. Databases Curation, 2022)

getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories. - Vincent Moco; Damien Cazenave; Maëlle Garnier; Matthieu Pot; Isabel Marcelino; Antoine Talarmin; Stéphanie Guyomard-Rabenirina; Sébastien Breurec; Séverine Ferdinand; Alexis Dereeper; Yann Reynaud; David Couvin (BMC Bioinform., 2022)

Prediction of Mycobacterium Tuberculosis Lineages from Annotated Whole Genome Sequences: An Evolutionary Approach. - Wilfried Segretier; Erick Stattner; David Couvin; Nalin Rastogi (CEC, 2024)