A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors. - David de Juan; Mario Mellado; José Miguel Rodríguez-Frade; Patricia Hernanz-Falcón; Antonio Serrano; Antonio del Sol; Alfonso Valencia; Carlos Martínez-A; Ana María Rojas (ECCB/JBI, 2005)

Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories. - Manuel J. Gómez; Ramón Alonso-Allende; Florencio Pazos; Osvaldo Graña; David de Juan; Alfonso Valencia (Trans. Comp. Sys. Biology, 2005)

TreeDet: a web server to explore sequence space. - Angel Carro; Michael L. Tress; David de Juan; Florencio Pazos; Pedro Lopez-Romero; Antonio del Sol; Alfonso Valencia; Ana María Rojas (Nucleic Acids Res., 2006)

TSEMA: interactive prediction of protein pairings between interacting families. - José M. G. Izarzugaza; David de Juan; Carles Pons; Juan A. G. Ranea; Alfonso Valencia; Florencio Pazos (Nucleic Acids Res., 2006)

Enhancing the prediction of protein pairings between interacting families using orthology information. - José M. G. Izarzugaza; David de Juan; Carles Pons; Florencio Pazos; Alfonso Valencia (BMC Bioinform., 2008)

EcID. A database for the inference of functional interactions in E. coli. - Eduardo Andrés León; Iakes Ezkurdia; Beatriz García Jiménez; Alfonso Valencia; David de Juan (Nucleic Acids Res., 2009)

Selection of organisms for the co-evolution-based study of protein interactions. - Dorota Herman; David Ochoa; David de Juan; Daniel Lopez; Alfonso Valencia; Florencio Pazos (BMC Bioinform., 2011)

Mirroring co-evolving trees in the light of their topologies. - Iman Hajirasouliha; Alexander Schönhuth; David de Juan; Alfonso Valencia; Süleyman Cenk Sahinalp (Bioinform., 2012)

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. - Thilo Muth; Juan A. García-Martín; Antonio Rausell; David de Juan; Alfonso Valencia; Florencio Pazos (Bioinform., 2012)

Detection of significant protein coevolution. - David Ochoa; David de Juan; Alfonso Valencia; Florencio Pazos (Bioinform., 2015)

CAAStools: a toolbox to identify and test Convergent Amino Acid Substitutions. - Fabio Barteri; Alejandro Valenzuela; Xavier Farré; David de Juan; Gerard Muntané; Borja Esteve-Altava; Arcadi Navarro (Bioinform., 2023)