Automatic identification of fusion events in TIRF microscopy image sequences. - Katarina Mele; Adelle Coster; James G. Burchfield; Jamie Lopez; David E. James; William E. Hughes; Pascal Vallotton (ICCV Workshops, 2009)

Towards fully automated identification of vesicle-membrane fusion events in TIRF microscopy. - Katarina Mele; Pascal Vallotton; James G. Burchfield; David E. James; William E. Hughes (Int. J. Comput. Aided Eng. Technol., 2009)

Membrane boundary extraction using circular multiple paths. - Changming Sun; Pascal Vallotton; Dadong Wang; Jamie Lopez; Yvonne Ng; David E. James (Pattern Recognit., 2009)

Automating the quantification of membrane proteins under confocal microscopy. - Pascal Vallotton; Matthew Payne; Tomasz Bednarz; Luke Domanski; David E. James; William E. Hughes; Changming Sun (ISBI, 2012)

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway. - Pengyi Yang; Ellis Patrick; Shi-Xiong Tan; Daniel J. Fazakerley; James G. Burchfield; Christopher Gribben; Matthew J. Prior; David E. James; Yee Hwa Yang (Bioinform., 2014)

Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data. - Pengyi Yang; Sean J. Humphrey; David E. James; Yee Hwa Yang; Raja Jothi (Bioinform., 2016)

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. - Katie Wilkins; Mehedi Hassan; Margherita Francescatto; Jakob B. Jespersen; R. Gonzalo Parra; Bart Cuypers; Dan F. DeBlasio; Alexander Junge; Anupama Jigisha; Farzana Rahman; Griet Laenen; Sander Willems; et al. (BMC Bioinform., 2016)

Dynamic modelling of the PI3K/MTOR signalling network uncovers biphasic dependence of mTORC1 activity on the mTORC2 subunit SIN1. - Milad Ghomlaghi; Guang Yang; Sung-Young Shin; David E. James; Lan K. Nguyen (PLoS Comput. Biol., 2021)

eNODAL: an experimentally guided nutriomics data clustering method to unravel complex drug-diet interactions. - Xiangnan Xu; Alistair M. Senior; David G. Le Couteur; Victoria C. Cogger; David Raubenheimer; David E. James; Benjamin Parker; Stephen J. Simpson; Samuel Müller 001; Jean Y. H. Yang (Briefings Bioinform., 2024)