Chimera: Affordable Desktop Molecular Modeling on Linux Workstations. - David E. Konerding; Conrad C. Huang; Thomas E. Ferrin (Annual Linux Showcase & Conference, 2001)

The Grid2003 Production Grid: Principles and Practice. - Ian T. Foster; Jerry Gieraltowski; Scott Gose; Natalia Maltsev; Edward N. May; Alex A. Rodriguez; Dinanath Sulakhe; A. Vaniachine; Jim Shank; Saul Youssef; David Adams; Richard Baker 003; et al. (HPDC, 2004)

Essential Grid Workflow Monitoring Elements. - Daniel K. Gunter; Keith R. Jackson; David E. Konerding; Jason Lee 001; Brian Tierney (GCA, 2005)

PythonCLServiceTool: A Utility for Wrapping Command-Line Applications for The Grid. - David E. Konerding; Keith R. Jackson (Grid-Based Problem Solving Environments, 2006)

Science in the Cloud: Accelerating Discovery in the 21st Century. - Joseph L. Hellerstein; Kai J. Kohlhoff; David E. Konerding (IEEE Internet Comput., 2012)

Massively Multitask Networks for Drug Discovery. - Bharath Ramsundar; Steven Kearnes; Patrick Riley 001; Dale Webster; David E. Konerding; Vijay S. Pande (CoRR, 2015)