GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data. - Kevin C. Rue-Albrecht; Paul A. McGettigan; Belinda Hernández; Nicolas C. Nalpas; David A. Magee; Andrew C. Parnell; Stephen V. Gordon; David E. MacHugh (BMC Bioinform., 2016)

KPRR: a novel machine learning approach for effectively capturing nonadditive effects in genomic prediction. - Mianyan Li; Thomas Hall; David E. MacHugh; Liang Chen; Dorian Garrick; Lixian Wang; Fuping Zhao (Briefings Bioinform., 2024)