regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic. - Christian Jungreuthmayer; David E. Ruckerbauer; Jürgen Zanghellini (Biosyst., 2013)

CHOmine: an integrated data warehouse for CHO systems biology and modeling. - Matthias P. Gerstl; Michael Hanscho; David E. Ruckerbauer; Jürgen Zanghellini; Nicole Borth (Database J. Biol. Databases Curation, 2017)

Inclusion of maintenance energy improves the intracellular flux predictions of CHO. - Diana Széliová; Jerneja Stor; Isabella Thiel; Marcus Weinguny; Michael Hanscho; Gabriele Lhota; Nicole Borth; Jürgen Zanghellini; David E. Ruckerbauer; Isabel Rocha (PLoS Comput. Biol., 2021)