Profile scanning for three-dimensional structural patterns in protein sequences. - Michael Gribskov; M. Homyak; J. Edenfield; David S. Eisenberg (Comput. Appl. Biosci., 1988)

Finding families for genomic ORFans. - Daniel Fischer 001; David Eisenberg 001 (Bioinform., 1999)

Erratum. Finding families for genomic ORFans. - Daniel Fischer 001; David Eisenberg 001 (Bioinform., 1999)

DIP: the Database of Interacting Proteins. - Ioannis Xenarios; Danny W. Rice; Lukasz Salwínski; Marisa K. Baron; Edward M. Marcotte; David Eisenberg 001 (Nucleic Acids Res., 2000)

Mining literature for protein-protein interactions. - Edward M. Marcotte; Ioannis Xenarios; David Eisenberg 001 (Bioinform., 2001)

DIP: The Database of Interacting Proteins: 2001 update. - Ioannis Xenarios; Esteban Fernandez 002; Lukasz Salwínski; Xiaoqun Joyce Duan; Michael J. Thompson; Edward M. Marcotte; David Eisenberg 001 (Nucleic Acids Res., 2001)

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. - Ioannis Xenarios; Lukasz Salwínski; Xiaoqun Joyce Duan; Patrick Higney; Sul-Min Kim; David S. Eisenberg (Nucleic Acids Res., 2002)

The Database of Interacting Proteins: 2004 update. - Lukasz Salwínski; Christopher S. Miller; Adam J. Smith; Frank K. Pettit; James U. Bowie; David Eisenberg 001 (Nucleic Acids Res., 2004)

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins. - Lukasz Salwínski; David Eisenberg 001 (Bioinform., 2007)

Using inferred residue contacts to distinguish between correct and incorrect protein models. - Christopher S. Miller; David Eisenberg 001 (Bioinform., 2008)

Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis. - Robert Riley 002; Matteo Pellegrini; David Eisenberg 001 (PLoS Comput. Biol., 2008)

Annotating proteins with generalized functional linkages. - Richard Llewellyn; David S. Eisenberg (Proc. Natl. Acad. Sci. USA, 2008)

Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression. - Einat Sprinzak; Shawn Cokus; Todd O. Yeates; David Eisenberg 001; Matteo Pellegrini (BMC Syst. Biol., 2009)