LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. - David Ellinghaus; Stefan Kurtz; Ute Willhoeft (BMC Bioinform., 2008)

FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. - Lars Wienbrandt; Jan Christian Kässens; Jorge González-Domínguez; Bertil Schmidt; David Ellinghaus; Manfred Schimmler (ICCS, 2014)

Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems. - Jorge González-Domínguez; Lars Wienbrandt; Jan Christian Kässens; David Ellinghaus; Manfred Schimmler; Bertil Schmidt (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Haplotype synthesis analysis reveals functional variants underlying known genome-wide associated susceptibility loci. - André Lacour; David Ellinghaus; Stefan Schreiber; Andre Franke; Tim Becker (Bioinform., 2016)

Fast Genome-Wide Third-order SNP Interaction Tests with Information Gain on a Low-cost Heterogeneous Parallel FPGA-GPU Computing Architecture. - Lars Wienbrandt; Jan Christian Kässens; Matthias Hübenthal; David Ellinghaus (ICCS, 2017)

LitDB - Keeping Track of Research Papers From Your Institute Made Simple. - Jörn Bethune; Lars Kraemer; Ingo Thomsen; Andreas Keller; David Ellinghaus; Andre Franke (Source Code Biol. Medicine, 2017)

1, 000x Faster Than PLINK: Genome-Wide Epistasis Detection with Logistic Regression Using Combined FPGA and GPU Accelerators. - Lars Wienbrandt; Jan Christian Kässens; Matthias Hübenthal; David Ellinghaus (ICCS (2), 2018)

1000× faster than PLINK: Combined FPGA and GPU accelerators for logistic regression-based detection of epistasis. - Lars Wienbrandt; Jan Christian Kässens; Matthias Hübenthal; David Ellinghaus (J. Comput. Sci., 2019)

Reference-Based Haplotype Phasing with FPGAs. - Lars Wienbrandt; Jan Christian Kässens; David Ellinghaus (ICCS (3), 2020)

EagleImp: fast and accurate genome-wide phasing and imputation in a single tool. - Lars Wienbrandt; David Ellinghaus (Bioinform., 2022)

MAGScoT: a fast, lightweight and accurate bin-refinement tool. - Malte Rühlemann; Eike Matthias Wacker; David Ellinghaus; Andre Franke (Bioinform., 2022)

Logistic Regression with Covariate Clustering in Genome-Wide Association Interaction Studies. - Volker Neff; Lars Wienbrandt; David Ellinghaus (ICCS (Workshops 1), 2025)