ReactionMap: An Efficient Atom-Mapping Algorithm for Chemical Reactions. - David Fooshee; Alessio Andronico; Pierre Baldi (J. Chem. Inf. Model., 2013)

Accurate and efficient target prediction using a potency-sensitive influence-relevance voter. - Alessandro Lusci; Michael R. Browning; David Fooshee; S. Joshua Swamidass; Pierre Baldi (J. Cheminformatics, 2015)

Synergies Between Quantum Mechanics and Machine Learning in Reaction Prediction. - Peter J. Sadowski; David Fooshee; Niranjan Subrahmanya; Pierre Baldi (J. Chem. Inf. Model., 2016)

Computational Tools for Chemical Reactions: Simulation & Prediction. - David Fooshee (2017)