A scalable, flexible workflow for MethylCap-seq data analysis. - Benjamin Rodriguez; Hok-Hei Tam; David Frankhouser; Michael Trimarchi; Mark Murphy; Chris Kuo; Deval Parikh; Bryan Ball; Sebastian Schwind; John Curfman; William Blum; Guido Marcucci; et al. (GENSiPS, 2011)

Comparison of Insertional RNA Editing in Myxomycetes. - Cai Chen; David Frankhouser; Ralf Bundschuh (PLoS Comput. Biol., 2012)

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. - David E. Frankhouser; Mark Murphy; James S. Blachly; Jincheol Park; Mike W. Zoller; Javkhlan-Ochir Ganbat; John Curfman; John C. Byrd; Shili Lin; Guido Marcucci; Pearlly Yan; Ralf Bundschuh (Bioinform., 2014)

Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. - Deepak Nag Ayyala; David E. Frankhouser; Javkhlan-Ochir Ganbat; Guido Marcucci; Ralf Bundschuh; Pearlly Yan; Shili Lin (Briefings Bioinform., 2016)