PyPanda: a Python package for gene regulatory network reconstruction. - David G. P. van IJzendoorn; Kimberly Glass; John Quackenbush; Marieke L. Kuijjer (Bioinform., 2016)

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas. - David G. P. van IJzendoorn; Karoly Szuhai; Inge H. Briaire-de Bruijn; Marie Kostine; Marieke L. Kuijjer; Judith V. M. G. Bovée (PLoS Comput. Biol., 2019)