CARGO: a web portal to integrate customized biological information. - Ildefonso Cases; David G. Pisano; Eduardo Andrés León; Angel Carro; José María Fernández 001; Gonzalo Gómez-López; José Manuel Rodriguez; Jaime F. Vera; Alfonso Valencia; Ana María Rojas (Nucleic Acids Res., 2007)

Current Efforts to Integrate Biological Pathway Information. - Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (IWANN (2), 2009)

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. - Daniel Glez-Peña; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2009)

PathAgent: Multi-agent System for Updated Pathway Information Integration. - Miguel Reboiro-Jato; Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Celso Campos; Florentino Fdez-Riverola (PAAMS (Special Sessions and Workshops), 2010)

PathJam: a new service for integrating biological pathway information. - Daniel Glez-Peña; Miguel Reboiro-Jato; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (J. Integr. Bioinform., 2010)

waviCGH: a web application for the analysis and visualization of genomic copy number alterations. - Angel Carro; Daniel Rico; Oscar M. Rueda; Ramón Díaz-Uriarte; David G. Pisano (Nucleic Acids Res., 2010)

The EMBRACE web service collection. - Steve Pettifer; Jon C. Ison; Matús Kalas; Dave Thorne; Philip McDermott; Inge Jonassen; Ali Liaquat; José María Fernández 001; José Manuel Rodriguez; David G. Pisano; Christophe Blanchet; Mahmut Uludag; et al. (Nucleic Acids Res., 2010)

Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. - Daniel Glez-Peña; Osvaldo Graña; Florentino Fdez-Riverola; David G. Pisano (PACBB, 2011)

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. - Daniel Glez-Peña; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano; Gonzalo Gómez-López (PACBB, 2011)

EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies. - M. Márquez-Cid; G. Comesaña; R. Milne; G. Andrés; Núria Malats; David G. Pisano (PACBB, 2011)

PileLine: a toolbox to handle genome position information in next-generation sequencing studies. - Daniel Glez-Peña; Gonzalo Gómez-López; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano (BMC Bioinform., 2011)

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2011)

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (PACBB, 2012)

Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs. - Belén Lorente-Galdos; Ignacio Medina; Carlos Morcillo-Suarez; Txema Heredia; Angel Carreño-Torres; Ricardo Sangros; Josep Alegre; Guillermo Pita; Gemma Vellalta; Núria Malats; David G. Pisano; Joaquín Dopazo; et al. (Int. J. Data Min. Bioinform., 2012)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses. - Miriam Rubio-Camarillo; Gonzalo Gómez-López; José María Fernández 001; Alfonso Valencia; David G. Pisano (Bioinform., 2013)

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis. - Osvaldo Graña; Miriam Rubio-Camarillo; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (PACBB, 2015)

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. - Eduardo Andrés León; Daniel González-Peña; Gonzalo Gómez-López; David G. Pisano (Database J. Biol. Databases Curation, 2015)

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data. - Miriam Rubio-Camarillo; Hugo López-Fernández; Gonzalo Gómez-López; Angel Carro; José María Fernández 001; Florentino Fdez-Riverola; Daniel Glez-Peña; David G. Pisano (PACBB, 2016)

Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. - Osvaldo Graña; Hugo López-Fernández; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (Bioinform., 2018)