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A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory. - Rodoniki Athanasiadou; Benjamin Neymotin; Nathan Brandt; Wei Wang 275; Lionel A. Christiaen; David Gresham; Daniel Tranchina (PLoS Comput. Biol., 2019)

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0. - Claudia Skok Gibbs; Christopher A. Jackson; Giuseppe-Antonio Saldi; Andreas Tjärnberg; Aashna Shah; Aaron Watters; Nicholas De Veaux; Konstantine Tchourine; Ren Yi; Tymor Hamamsy; Dayanne M. Castro; Nicholas Carriero; et al. (Bioinform., 2022)