Establishing perceptual criteria on image quality in diagnostic telepathology. - David J. Foran; Peter Meer; Thomas V. Papathomas; Ivan Marsic; Leiguang Gong; Casimir A. Kulikowski; R. L. Trelstad (ICIP (1), 1996)

Compression guidelines for diagnostic telepathology. - David J. Foran; Peter Meer; Thomas V. Papathomas; Ivan Marsic (IEEE Trans. Inf. Technol. Biomed., 1997)

Shape-based image indexing and retrieval for diagnostic pathology. - Dorin Comaniciu; Peter Meer; David J. Foran (ICPR, 1998)

Bimodal system for interactive indexing and retrieval of pathology images. - Dorin Comaniciu; Peter Meer; David J. Foran; Attila Medl (WACV, 1998)

Decision Support System for Multiuser Remote Microscopy in Telepathology. - Dorin Comaniciu; Bogdan Georgescu; Peter Meer; Wenjin Chen; David J. Foran (CBMS, 1999)

Image-guided decision support system for pathology. - Dorin Comaniciu; Peter Meer; David J. Foran (Mach. Vis. Appl., 1999)

Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy. - David J. Foran; Dorin Comaniciu; Peter Meer; Lauri A. Goodell (IEEE Trans. Inf. Technol. Biomed., 2000)

Unsupervised imaging, registration and archiving of tissue microarrays. - Wenjin Chen; David J. Foran; Michael Reiss (AMIA, 2002)

A Dynamic Imaging Database for 3-D Morphologic Analysis and Clinical Assessment in Diagnostic Radiology. - Gabriela Niculescu; Louay Toni; David J. Foran; John L. Nosher; Kevin J. DeMarco (AMIA, 2002)

Volumetry of Hepatic Metastases in Computed Tomography Using the Watershed and Active Contour Algorithms. - Peter J. Yim; David J. Foran (CBMS, 2003)

Engineering a Peer-to-Peer Collaboratory for Tissue Microarray Research. - Cristina Schmidt; Manish Parashar; Wenjin Chen; David J. Foran (CLADE, 2004)

A Prototype for Unsupervised Analysis of Tissue Microarrays for Cancer Research and Diagnostics. - Wenjin Chen; Michael Reiss; David J. Foran (IEEE Trans. Inf. Technol. Biomed., 2004)

Image mining for investigative pathology using optimized feature extraction and data fusion. - Wenjin Chen; Peter Meer; Bogdan Georgescu; Wei He; Lauri A. Goodell; David J. Foran (Comput. Methods Programs Biomed., 2005)

Unsupervised segmentation based on robust estimation and color active contour models. - Lin Yang 002; Peter Meer; David J. Foran (IEEE Trans. Inf. Technol. Biomed., 2005)

Multiple Class Segmentation Using A Unified Framework over Mean-Shift Patches. - Lin Yang 002; Peter Meer; David J. Foran (CVPR, 2007)

A Variational Framework for Partially Occluded Image Segmentation using Coarse to Fine Shape Alignment and Semi-Parametric Density Approximation. - Lin Yang 002; David J. Foran (ICIP (1), 2007)

A Clinically Motivated 2-Fold Framework for Quantifying and Classifying Immunohistochemically Stained Specimens. - Bonnie Hall; Wenjin Chen; Michael Reiss; David J. Foran (MICCAI (2), 2007)

High Throughput Analysis of Breast Cancer Specimens on the Grid. - Lin Yang 002; Wenjin Chen; Peter Meer; Gratian Salaru; Michael D. Feldman; David J. Foran (MICCAI (1), 2007)

Classification of hematologic malignancies using texton signatures. - Oncel Tuzel; Lin Yang 002; Peter Meer; David J. Foran (Pattern Anal. Appl., 2007)

Using Betweenness Centrality to Identify Manifold Shortcuts. - William J. Cukierski; David J. Foran (ICDM Workshops, 2008)

A fast and accurate tracking algorithm of left ventricles in 3D echocardiography. - Lin Yang 002; Bogdan Georgescu; Yefeng Zheng 001; David J. Foran; Dorin Comaniciu (ISBI, 2008)

Automatic Image Analysis of Histopathology Specimens Using Concave Vertex Graph. - Lin Yang 002; Oncel Tuzel; Peter Meer; David J. Foran (MICCAI (1), 2008)

Computer-assisted assessment of the Human Epidermal Growth Factor Receptor 2 immunohistochemical assay in imaged histologic sections using a membrane isolation algorithm and quantitative analysis of positive controls. - Bonnie Hall; Monica Ianosi-Irimie; Parisa Javidian; Wenjin Chen; Shridar Ganesan; David J. Foran (BMC Medical Imaging, 2008)

A Parallel Point Matching Algorithm for Landmark Based Image Registration Using Multicore Platform. - Lin Yang 002; Leiguang Gong; Hong Zhang; John L. Nosher; David J. Foran (Euro-Par, 2009)

Investigating the use of autonomic cloudbursts for high-throughput medical image registration. - Hyunjoo Kim; Manish Parashar; David J. Foran; Lin Yang 002 (GRID, 2009)

Moving Beyond Color: the Case for Multispectral Imaging in Brightfield Pathology. - William J. Cukierski; Xin Qi 007; David J. Foran (ISBI, 2009)

A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. - David J. Foran; Lin Yang 002; Oncel Tuzel; Wenjin Chen; Jun Hu; Tahsin M. Kurç; Renato Ferreira 001; Joel H. Saltz (ISBI, 2009)

3D Segmentation of the Liver Using Free-Form Deformation Based on Boosting and Deformation Gradients. - Hong Zhang; Lin Yang; David J. Foran; John L. Nosher; Peter J. Yim (ISBI, 2009)

A deformable model for tracking tumors across consecutive imaging studies. - Gabriela Niculescu; John L. Nosher; M. D. Benjamin Schneider; David J. Foran (Int. J. Comput. Assist. Radiol. Surg., 2009)

Virtual Microscopy and Grid-Enabled Decision Support for Large-Scale Analysis of Imaged Pathology Specimens. - Lin Yang 002; Wenjin Chen; Peter Meer; Gratian Salaru; Lauri A. Goodell; Viktors Berstis; David J. Foran (IEEE Trans. Inf. Technol. Biomed., 2009)

PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology. - Lin Yang 002; Oncel Tuzel; Wenjin Chen; Peter Meer; Gratian Salaru; Lauri A. Goodell; David J. Foran (IEEE Trans. Inf. Technol. Biomed., 2009)

Metamerism in multispectral imaging of histopathology specimens. - William J. Cukierski; David J. Foran (ISBI, 2010)

An adaptive tracking algorithm of lung tumors in fluoroscopy using online learned collaborative trackers. - Baiyang Liu; Lin Yang; Casimir A. Kulikowski; Jinghao Zhou; Leiguang Gong; David J. Foran; Salma J. Jabbour; Ning J. Yue (ISBI, 2010)

High Performance Computing Techniques for Scaling Image Analysis Workflows. - Patrick M. Widener; Tahsin M. Kurç; Wenjin Chen; Fusheng Wang 001; Lin Yang 002; Jun Hu; Vijay Kumar; Vicky Chu; Lee Cooper 001; Jun Kong 002; Ashish Sharma 001; Tony Pan; et al. (PARA (2), 2010)

Dynamic online registration guided collaborative tracking of lung tumor movement in fluoroscopic videos. - Baiyang Liu; Lin Yang 002; Casimir A. Kulikowski; Leiguang Gong; David J. Foran; Salma K. Jabbour; Ning J. Yue (ISBI, 2011)

Comparative performance analysis of stained histopathology specimens using RGB and multispectral imaging. - Xin Qi 007; Fuyong Xing; David J. Foran; Lin Yang 002 (Computer-Aided Diagnosis, 2011)

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. - David J. Foran; Lin Yang 002; Wenjin Chen; Jun Hu; Lauri A. Goodell; Michael Reiss; Fusheng Wang 001; Tahsin M. Kurç; Tony Pan; Ashish Sharma 001; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2011)

Digitized tissue microarray classification using sparse reconstruction. - Fuyong Xing; Baiyang Liu; Xin Qi 007; David J. Foran; Lin Yang 002 (Image Processing, 2012)

Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. - William J. Cukierski; Kaustav Nandy; Prabhakar R. Gudla; Karen J. Meaburn; Tom Misteli; David J. Foran; Stephen J. Lockett (BMC Bioinform., 2012)

Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set. - Xin Qi 007; Fuyong Xing; David J. Foran; Lin Yang 002 (IEEE Trans. Biomed. Eng., 2012)

Content-based white blood cell retrieval on bright-field pathology images. - Xin Qi 007; Rebekah H. Gensure; David J. Foran; Lin Yang 002 (Digital Pathology, 2013)

A Semi-Automated Positioning System for Contact-Mode Atomic Force Microscopy (AFM). - Rajarshi Roy 005; Wenjin Chen; Lei Cong; Lauri A. Goodell; David J. Foran; Jaydev P. Desai (IEEE Trans Autom. Sci. Eng., 2013)

Collaborative marketplaces for eScience: A medical imaging use case. - Mengsong Zou; Javier Diaz Montes; Ivan Rodero; Manish Parashar; Ioan Petri; Omer F. Rana; Xin Qi 007; David J. Foran (CTS, 2014)

Parallel content-based sub-image retrieval using hierarchical searching. - Lin Yang 002; Xin Qi 007; Fuyong Xing; Tahsin M. Kurç; Joel H. Saltz; David J. Foran (Bioinform., 2014)

Content-based histopathology image retrieval using CometCloud. - Xin Qi 007; Daihou Wang; Ivan Rodero; Javier Diaz Montes; Rebekah H. Gensure; Fuyong Xing; Hua Zhong; Lauri A. Goodell; Manish Parashar; David J. Foran; Lin Yang 002 (BMC Bioinform., 2014)

Probabilistic Estimation of Mechanical Properties of Biomaterials Using Atomic Force Microscopy. - Rajarshi Roy 005; Wenjin Chen; Lei Cong; Lauri A. Goodell; David J. Foran; Jaydev P. Desai (IEEE Trans. Biomed. Eng., 2014)

Computer aided analysis of prostate histopathology images Gleason grading especially for Gleason score 7. - Jian Ren 005; Evita T. Sadimin; Daihou Wang; Jonathan I. Epstein; David J. Foran; Xin Qi 007 (EMBC, 2015)

Robust automatic breast cancer staging using a combination of functional genomics and image-omics. - Hai Su; Yong Shen; Fuyong Xing; Xin Qi 007; Kim M. Hirshfield; Lin Yang 002; David J. Foran (EMBC, 2015)

Exploring automatic prostate histopathology image gleason grading via local structure modeling. - Daihou Wang; David J. Foran; Jian Ren 005; Hua Zhong; Isaac Y. Kim; Xin Qi 007 (EMBC, 2015)

HetroCV: Auto-tuning Framework and Runtime for Image Processing and Computer Vision Applications on Heterogeneous Platform. - Daihou Wang; David J. Foran; Xin Qi 007; Manish Parashar (ICPP Workshops, 2015)

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. - Tahsin M. Kurç; Xin Qi 007; Daihou Wang; Fusheng Wang 001; George Teodoro; Lee Cooper 001; Michael Nalisnik; Lin Yang 002; Joel H. Saltz; David J. Foran (BMC Bioinform., 2015)

A Support Vector Machine based Prediction Model for Discrimination of Malignant Pulmonary Nodules from Benign Nodules. - Yan Wu; Emmanuel Zachariah; Judith Amorosa; Anjani Naidu; Mina L. Labib; Jamil Shaikh; Donna Eckstein; Sinae Kim; John E. Langenfeld; Joseph Aisner; John L. Nosher; Robert S. DiPaola; et al. (BIOIMAGING, 2016)

Toward a Portable Cancer Diagnostic Tool Using a Disposable MEMS-Based Biochip. - Hardik Jeetendra Pandya; Kihan Park; Wenjin Chen; Lauri A. Goodell; David J. Foran; Jaydev P. Desai (IEEE Trans. Biomed. Eng., 2016)

Personalized Image Aesthetics. - Jian Ren 005; Xiaohui Shen; Zhe Lin 001; Radomír Mech; David J. Foran (ICCV, 2017)

Supporting Real-Time Jobs on the IBM Blue Gene/Q: Simulation-Based Study. - Daihou Wang; Eun-Sung Jung; Rajkumar Kettimuthu; Ian T. Foster; David J. Foran; Manish Parashar (JSSPP, 2017)

Computer aided analysis of prostate histopathology images to support a refined Gleason grading system. - Jian Ren 005; Evita T. Sadimin; David J. Foran; Xin Qi 007 (Image Processing, 2017)

Parallel Versus Distributed Data Access for Gigapixel-Resolution Histology Images: Challenges and Opportunities. - Esma Yildirim; David J. Foran (IEEE J. Biomed. Health Informatics, 2017)

Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. - Jian Ren 005; Ilker Hacihaliloglu; Eric A. Singer; David J. Foran; Xin Qi 007 (MICCAI (2), 2018)

Factorized Adversarial Networks for Unsupervised Domain Adaptation. - Jian Ren 005; Jianchao Yang; Ning Xu 001; David J. Foran (CoRR, 2018)

EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching. - Jian Ren 005; Zhe Li 008; Jianchao Yang; Ning Xu 001; Tianbao Yang; David J. Foran (CoRR, 2018)

Electromechanical Coupling Factor of Breast Tissue as a Biomarker for Breast Cancer. - Kihan Park; Wenjin Chen; Marina A. Chekmareva; David J. Foran; Jaydev P. Desai (IEEE Trans. Biomed. Eng., 2018)

EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching From Scratch. - Jian Ren 005; Zhe Li 008; Jianchao Yang; Ning Xu 001; Tianbao Yang; David J. Foran (CVPR, 2019)

Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. - Le Hou; Vu Nguyen 004; Ariel B. Kanevsky; Dimitris Samaras; Tahsin M. Kurç; Tianhao Zhao; Rajarsi R. Gupta; Yi Gao 002; Wenjin Chen; David J. Foran; Joel H. Saltz (Pattern Recognit., 2019)

CBEx: A Hybrid Approach for Cancer Biomarker Extraction. - Xiangyu Gao; Jinhe Shi; Wenjin Chen; Nancy Sazo; Huiqi Chu; Evita T. Sadimin; David J. Foran; Yi Chen 001 (BIBM, 2020)

Chest X-ray Image Phase Features for Improved Diagnosis of COVID-19 Using Convolutional Neural Network. - Xiao Qi; Lloyd G. Brown; David J. Foran; Ilker Hacihaliloglu (CoRR, 2020)

AI in Medical Imaging Informatics: Current Challenges and Future Directions. - Andreas S. Panayides; Amir A. Amini; Nenad D. Filipovic; Ashish Sharma 001; Sotirios A. Tsaftaris; Alistair A. Young; David J. Foran; Nhan Do; Spyretta Golemati; Tahsin M. Kurç; Kun Huang 001; Konstantina S. Nikita; et al. (IEEE J. Biomed. Health Informatics, 2020)

Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. - Hui Che; Sumana Ramanathan; David J. Foran; John L. Nosher; Vishal M. Patel; Ilker Hacihaliloglu (ASMUS@MICCAI, 2021)

Multi-Feature Semi-Supervised Learning for COVID-19 Diagnosis from Chest X-Ray Images. - Xiao Qi; David J. Foran; John L. Nosher; Ilker Hacihaliloglu (MLMI@MICCAI, 2021)

Liver disease classification from ultrasound using multi-scale CNN. - Hui Che; Lloyd G. Brown; David J. Foran; John L. Nosher; Ilker Hacihaliloglu (Int. J. Comput. Assist. Radiol. Surg., 2021)

Chest X-ray image phase features for improved diagnosis of COVID-19 using convolutional neural network. - Xiao Qi; Lloyd G. Brown; David J. Foran; John L. Nosher; Ilker Hacihaliloglu (Int. J. Comput. Assist. Radiol. Surg., 2021)

Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. - Xiao Qi; David J. Foran; John L. Nosher; Ilker Hacihaliloglu (MILLanD@MICCAI, 2022)

Multi-Scale Feature Fusion using Parallel-Attention Block for COVID-19 Chest X-ray Diagnosis. - Xiao Qi; David J. Foran; John L. Nosher; Ilker Hacihaliloglu (CoRR, 2023)

BioReX: Biomarker Information Extraction Inspired by Aspect-Based Sentiment Analysis. - Weiting Gao; Xiangyu Gao; Wenjin Chen; David J. Foran; Yi Chen 001 (PKDD (4), 2024)

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. - Betina Idnay; Zihan Xu; William G. Adams; Mohammad Adibuzzaman; Nicholas R. Anderson 001; Neil Bahroos; Douglas S. Bell; Cody Bumgardner; Thomas R. Campion Jr.; Victor M. Castro; James J. Cimino; I. Glenn Cohen; et al. (CoRR, 2024)

A Study on the Performance of U-Net Modifications in Retroperitoneal Tumor Segmentation. - Moein Heidari; Ehsan Khodapanah Aghdam; Alexander Manzella; Daniel Hsu 004; Rebecca Scalabrino; Wenjin Chen; David J. Foran; Ilker Hacihaliloglu (CoRR, 2025)