NSF supported projects: parallel computation as an integrated component in the undergraduate curriculum in computer science. - David J. John (SIGCSE, 1994)

Pursuing bounds of ir(Qn). - David J. John (ACM Southeast Regional Conference, 1998)

Counting Balanced Ternary Designs. - Margaret Ann Francel; David J. John (Ars Comb., 1998)

Co-evolution With The Bierwirth-Mattfeld Hybrid Scheduler. - David J. John (GECCO, 2002)

3-Regular Hypergraphs that are Decomposable and Threshold. - Margaret Ann Francel; David J. John (Ars Comb., 2003)

An algorithm for constructing an even grammar from a language sample. - Margaret Ann Francel; David J. John (ACM Southeast Regional Conference, 2004)

Heuristics for dependency conjectures in proteomic signaling pathways. - Edward E. Allen; Jacquelyn S. Fetrow; David J. John; Stan J. Thomas (ACM Southeast Regional Conference (1), 2005)

Constructing an even grammar from a 2-element sample. - Margaret Ann Francel; David J. John (ACM Southeast Regional Conference (1), 2005)

Reconstructing networks using co-temporal functions. - Edward E. Allen; Anthony Pecorella; Jacquelyn S. Fetrow; David J. John; William H. Turkett Jr. (ACM Southeast Regional Conference, 2006)

Bioinformatics and computing curriculum: a new model for interdisciplinary courses. - Jacquelyn S. Fetrow; David J. John (SIGCSE, 2006)

The shuffle index and evaluation of models of signal transduction pathways. - Edward E. Allen; Liyang Diao; Jacquelyn S. Fetrow; David J. John; Richard F. Loeser; Leslie B. Poole (ACM Southeast Regional Conference, 2007)

Additional limitations of the clustering validation method figure of merit. - Amy L. Olex; David J. John; Elizabeth M. Hiltbold; Jacquelyn S. Fetrow (ACM Southeast Regional Conference, 2007)

Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information Scores. - David J. John; Jacquelyn S. Fetrow; James L. Norris (BIBE, 2007)

Examining effects of variability on systems biology modeling algorithms. - Rachel A. Black; David J. John; Jacquelyn S. Fetrow; James L. Norris (BCB, 2010)

Comparison of Co-temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets. - Edward E. Allen; James L. Norris; David J. John; Stan J. Thomas; William H. Turkett Jr.; Jacquelyn S. Fetrow (BIBE, 2010)

Probabilistic Signal Network Models from Multiple Replicates of Sparse Time-Course Data. - Kristopher L. Patton; David J. John; James L. Norris (BIBM, 2011)

Continuous Cotemporal Probabilistic Modeling of Systems Biology Networks from Sparse Data. - David J. John; Jacquelyn S. Fetrow; James L. Norris (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Bayesian probabilistic network modeling from multiple independent replicates. - Kristopher L. Patton; David J. John; James L. Norris (BMC Bioinform., 2012)

An initial framework for evolving computer configurations as a moving target defense. - Brian Lucas; Errin W. Fulp; David J. John; Daniel A. Cañas (CISR, 2014)

Evolutionary based moving target cyber defense. - David J. John; Robert W. Smith 002; William H. Turkett Jr.; Daniel A. Cañas; Errin W. Fulp (GECCO (Companion), 2014)

Parallel and Distributed Computing across the Computer Science Curriculum. - David J. John; Stan J. Thomas (IPDPS Workshops, 2014)

Hierarchical Probabilistic Interaction Modeling for Multiple Gene Expression Replicates. - Kristopher L. Patton; David J. John; James L. Norris; Daniel R. Lewis; Gloria K. Muday (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

An Evolutionary Strategy for Resilient Cyber Defense. - Errin W. Fulp; H. Donald Gage; David J. John; Matthew R. McNiece; William H. Turkett Jr.; Xin Zhou (GLOBECOM, 2015)

A BCHC genetic algorithm model of cotemporal hierarchical Arabidopsis thaliana gene interactions. - Bree Ann LaPointe; David J. John; James L. Norris; Edward E. Allen; Alexandria F. Harkey; Joelle K. Muhlemann; Gloria K. Muday (BIBM, 2018)

Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis Thaliana Gene Interactions. - Edward E. Allen; John Farrell; Alexandria F. Harkey; David J. John; Gloria K. Muday; James L. Norris; Bo Wu (AlCoB, 2020)

Using evolutionary algorithms and pareto ranking to identify secure virtual local area networks. - Alina Pacheco Rodríguez; Errin W. Fulp; David J. John; Jinku Cui (GECCO Companion, 2020)