A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised. - David J. Studholme; Neil D. Rawlings; Alan J. Barrett; Alex Bateman (BMC Bioinform., 2003)

The Pfam protein families database. - Alex Bateman; Lachlan James M. Coin; Richard Durbin; Robert D. Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L. L. Sonnhammer; David J. Studholme; Corin Yeats; et al. (Nucleic Acids Res., 2004)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss. - Quan-Yuan He; Xiang-Hua Liu; Qiang Li; David J. Studholme; Xuan-Wen Li; Song-Ping Liang (Bioinform., 2006)

Marker development for the genetic study of natural variation in Arabidopsis thaliana. - Adnane Nemri; Michael M. Neff; Michael Burrell; Jonathan D. G. Jones; David J. Studholme (Bioinform., 2007)

Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. - Anthony J. Bagnall; Simon Moxon; David J. Studholme; Vincent Moulton (BIOCOMP, 2008)

A toolkit for analysing large-scale plant small RNA datasets. - Simon Moxon; Frank Schwach; Tamas Dalmay; Daniel MacLean; David J. Studholme; Vincent Moulton (Bioinform., 2008)

De novo assembly of short sequence reads. - Konrad H. Paszkiewicz; David J. Studholme (Briefings Bioinform., 2010)

Finding sRNA generative locales from high-throughput sequencing data with NiBLS. - Daniel MacLean; Vincent Moulton; David J. Studholme (BMC Bioinform., 2010)

Data management challenges for artificial intelligence in plant and agricultural research. - Hugh F. Williamson; Julia Brettschneider; Mario Cáccamo; Robert P. Davey; Carole A. Goble; Paul J. Kersey; Sean T. May; Richard J. Morris; Richard Ostler; Tony P. Pridmore; Christopher J. Rawlings; David J. Studholme; et al. (F1000Research, 2021)