Boolean Modeling of Cellular and Molecular Pathways Involved in Influenza Infection. - Christopher S. Anderson; Marta L. DeDiego; David J. Topham; Juilee Thakar (Comput. Math. Methods Medicine, 2016)

FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. - Yun Zhang 021; David J. Topham; Juilee Thakar; Xing Qiu (Bioinform., 2017)

Antigenic cartography of H1N1 influenza viruses using sequence-based antigenic distance calculation. - Christopher S. Anderson; Patrick R. McCall; Harry A. Stern; Hongmei Yang; David J. Topham (BMC Bioinform., 2018)

Highly efficient hypothesis testing methods for regression-type tests with correlated observations and heterogeneous variance structure. - Yun Zhang 021; Gautam Bandyopadhyay; David J. Topham; Ann R. Falsey; Xing Qiu (BMC Bioinform., 2019)

Implementing sequence-based antigenic distance calculation into immunological shape space model. - Christopher S. Anderson; Mark Y. Sangster; Hongmei Yang; Thomas J. Mariani; Sidhartha Chaudhury; David J. Topham (BMC Bioinform., 2020)

A systems genomics approach uncovers molecular associates of RSV severity. - Matthew N. McCall; Chin-Yi Chu; Lu Wang; Lauren Benoodt; Juilee Thakar; Anthony Corbett; Jeanne Holden-Wiltse; Christopher Slaunwhite; Alex Grier; Steven R. Gill; Ann R. Falsey; David J. Topham; et al. (PLoS Comput. Biol., 2021)

MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms. - Mike Sportiello; David J. Topham (J. Open Source Softw., 2024)