Amino Acid Interaction (INTAA) web server. - Jakub Galgonek; Jirí Vymetal; David Jakubec; Jirí Vondrásek (Nucleic Acids Res., 2017)

3DPatch: fast 3D structure visualization with residue conservation. - David Jakubec; Jirí Vondrásek; Robert D. Finn (Bioinform., 2019)

Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures. - Jirí Vymetal; David Jakubec; Jakub Galgonek; Jirí Vondrásek (Nucleic Acids Res., 2021)

PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. - David Jakubec; Petr Skoda 001; Radoslav Krivák; Marian Novotny; David Hoksza (Nucleic Acids Res., 2022)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)