Longest-match String Searching for Ziv-Lempel Compression. - Timothy C. Bell; David Kulp (Softw. Pract. Exp., 1993)

A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA. - David Kulp; David Haussler; Martin G. Reese; Frank H. Eeckman (ISMB, 1996)

Improved Splice Site Detection in Genie. - Martin G. Reese; Frank H. Eeckman; David Kulp; David Haussler (J. Comput. Biol., 1997)

Structure-Based Comparison of Four Eukaryotic Genomes. - Melissa S. Cline; Guoying Liu; Ann E. Loraine; Ron Shigeta; Jill Cheng; Gangwu Mei; David Kulp; Michael A. Siani-Rose (Pacific Symposium on Biocomputing, 2002)

NetAffx: affymetrix probeset annotations. - Guoying Liu; Ann E. Loraine; Ron Shigeta; Melissa S. Cline; Jill Cheng; Stephen A. Chervitz; David Kulp; Michael A. Siani-Rose (SAC, 2002)

Gene structure-based splice variant deconvolution using a microarry platform. - Hui Wang 007; Earl Hubbell; Jing-Shan Hu; Gangwu Mei; Melissa S. Cline; Gang Lu; Tyson Clark; Michael A. Siani-Rose; Manuel Ares; David Kulp; David Haussler (ISMB (Supplement of Bioinformatics), 2003)

Algorithms for large-scale genotyping microarrays. - Wei-Min Liu; Xiaojun Di; Geoffrey Yang; Hajime Matsuzaki; Jing Huang 024; Rui Mei; Thomas B. Ryder; Teresa A. Webster; Shoulian Dong; Guoying Liu; Keith W. Jones; Giulia C. Kennedy; et al. (Bioinform., 2003)

NetAffx: Affymetrix probesets and annotations. - Guoying Liu; Ann E. Loraine; Ron Shigeta; Melissa S. Cline; Jill Cheng; Venu Valmeekam; Shaw Sun; David Kulp; Michael A. Siani-Rose (Nucleic Acids Res., 2003)

The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome. - Melissa S. Cline; Ron Shigeta; Raymond Wheeler; Michael A. Siani-Rose; David Kulp; Ann E. Loraine (Pacific Symposium on Biocomputing, 2004)

Model-P: a basecalling method for resequencing microarrays of diploid samples. - Yiping Zhan; David Kulp (ECCB/JBI, 2005)

Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes. - David Kulp; Manjunatha Jagalur (Systems Biology and Regulatory Genomics, 2005)

Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays. - Xiaojun Di; Hajime Matsuzaki; Teresa A. Webster; Earl Hubbell; Guoying Liu; Shoulian Dong; Dan Bartell; Jing Huang 024; Richard Chiles; Geoffrey Yang; Mei-mei Shen; David Kulp; et al. (Bioinform., 2005)

Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays. - Charles W. Sugnet; Karpagam Srinivasan; Tyson Clark; Georgeann O'Brien; Melissa S. Cline; Hui Wang 007; Alan Williams; David Kulp; John Blume; David Haussler; Manuel Ares (PLoS Comput. Biol., 2006)

Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering. - Manjunatha Jagalur; Chris Pal; Erik G. Learned-Miller; R. Thomas Zoeller; David Kulp (BMC Bioinform., 2007)