Protein co-expression network analysis (ProCoNA). - David L. Gibbs; Arie Baratt; Ralph S. Baric; Yoshihiro Kawaoka; Richard D. Smith; Eric S. Orwoll; Michael G. Katze; Shannon K. McWeeney (J. Clin. Bioinform., 2013)

Combining dependent P-values with an empirical adaptation of Brown's method. - William Poole; David L. Gibbs; Ilya Shmulevich; Brady Bernard; Theo A. Knijnenburg (Bioinform., 2016)

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle. - David L. Gibbs; Ilya Shmulevich (PLoS Comput. Biol., 2017)

Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters. - Moriah Echlin; Boris Aguilar; Max Notarangelo; David L. Gibbs; Ilya Shmulevich (Entropy, 2018)