Protein analyst - a distributed object environment for protein sequence and structure analysis. - Mansoor A. S. Saqi; David L. Wild; M. J. Hartshorn (Bioinform., 1999)

A Bayesian network model for protein fold and remote homologue recognition. - Alpan Raval; Zoubin Ghahramani; David L. Wild (Bioinform., 2002)

Protein secondary structure prediction using sigmoid belief networks to parameterize segmental semi-Markov models. - Wei Chu; Zoubin Ghahramani; David L. Wild (ESANN, 2004)

A graphical model for protein secondary structure prediction. - Wei Chu; Zoubin Ghahramani; David L. Wild (ICML, 2004)

The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. - Philip E. Bourne; C. K. J. Allerston; Werner G. Krebs; Wilfred W. Li; Ilya N. Shindyalov; Adam Godzik; Iddo Friedberg; Tong Liu; David L. Wild; Seungwoo Hwang; Zoubin Ghahramani; Li Chen 022; et al. (Pacific Symposium on Biocomputing, 2004)

Clustering Protein Sequence and Structure Space with Infinite Gaussian Mixture Models. - Ananya Dubey; Seungwoo Hwang; Claudia Rangel; Carl Edward Rasmussen; Zoubin Ghahramani; David L. Wild (Pacific Symposium on Biocomputing, 2004)

Modeling T-cell activation using gene expression profiling and state-space models. - Claudia Rangel; John Angus; Zoubin Ghahramani; Maria Lioumi; Elizabeth Sotheran; Alessia Gaiba; David L. Wild; Francesco Falciani (Bioinform., 2004)

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. - Matthew J. Beal; Francesco Falciani; Zoubin Ghahramani; Claudia Rangel; David L. Wild (Bioinform., 2005)

Biomarker discovery in microarray gene expression data with Gaussian processes. - Wei Chu; Zoubin Ghahramani; Francesco Falciani; David L. Wild (Bioinform., 2005)

Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model. - Wei Chu; Zoubin Ghahramani; Roland Krause; David L. Wild (Pacific Symposium on Biocomputing, 2006)

Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction. - Wei Chu; Zoubin Ghahramani; Alexei A. Podtelezhnikov; David L. Wild (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

CRANKITE: A fast polypeptide backbone conformation sampler. - Alexei A. Podtelezhnikov; David L. Wild (Source Code Biol. Medicine, 2008)

Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. - Oliver Stegle; Katherine J. Denby; David L. Wild; Stuart McHattie; Andrew Meade; Zoubin Ghahramani; Karsten M. Borgwardt (GCB, 2009)

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. - Oliver Stegle; Katherine J. Denby; David L. Wild; Zoubin Ghahramani; Karsten M. Borgwardt (RECOMB, 2009)

R/BHC: fast Bayesian hierarchical clustering for microarray data. - Richard S. Savage; Katherine A. Heller; Yang Xu 023; Zoubin Ghahramani; William M. Truman; Murray Grant; Katherine J. Denby; David L. Wild (BMC Bioinform., 2009)

An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. - Mansoor A. S. Saqi; Richard J. B. Dobson; Preben Kraben; David A. Hodgson; David L. Wild (J. Integr. Bioinform., 2009)

Modeling and Visualizing Uncertainty in Gene Expression Clusters Using Dirichlet Process Mixtures. - Carl Edward Rasmussen; Bernard J. de la Cruz; Zoubin Ghahramani; David L. Wild (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Inferring Transcriptional Networks Using Prior Biological Knowledge and Constrained State-Space Models. - John Angus; Matthew J. Beal; Juan Li; Claudia Rangel; David L. Wild (Learning and Inference in Computational Systems Biology, 2010)

Discovering transcriptional modules by Bayesian data integration. - Richard S. Savage; Zoubin Ghahramani; Jim E. Griffin; Bernard J. de la Cruz; David L. Wild (Bioinform., 2010)

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. - Oliver Stegle; Katherine J. Denby; Emma J. Cooke; David L. Wild; Zoubin Ghahramani; Karsten M. Borgwardt (J. Comput. Biol., 2010)

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. - Emma J. Cooke; Richard S. Savage; Paul D. W. Kirk; Robert Darkins; David L. Wild (BMC Bioinform., 2011)

Bayesian correlated clustering to integrate multiple datasets. - Paul D. W. Kirk; Jim E. Griffin; Richard S. Savage; Zoubin Ghahramani; David L. Wild (Bioinform., 2012)

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. - Christopher A. Penfold; Vicky Buchanan-Wollaston; Katherine J. Denby; David L. Wild (Bioinform., 2012)

Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure. - Nikolas S. Burkoff; Csilla Várnai; David L. Wild (Bioinform., 2013)

Inferring orthologous gene regulatory networks using interspecies data fusion. - Christopher A. Penfold; Jonathan B. A. Millar; David L. Wild (Bioinform., 2015)

Exploiting molecular dynamics in Nested Sampling simulations of small peptides. - Nikolas S. Burkoff; Robert J. N. Baldock; Csilla Várnai; David L. Wild; Gábor Csányi (Comput. Phys. Commun., 2016)

Bringing numerous methods for expression and promoter analysis to a public cloud computing service. - Krzysztof Polanski; Bo Gao 001; Sam A. Mason; Paul Brown; Sascha Ott; Katherine J. Denby; David L. Wild (Bioinform., 2018)

ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification. - Nathan Cunningham; Jim E. Griffin; David L. Wild (Adv. Data Anal. Classif., 2020)