microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets. - Dominic Grün; Yi-Lu Wang; David Langenberger; Kristin C. Gunsalus; Nikolaus Rajewsky (PLoS Comput. Biol., 2005)

Evidence for human microRNA-offset RNAs in small RNA sequencing data. - David Langenberger; Clara Bermudez-Santana; Jana Hertel; Steve Hoffmann; Philipp Khaitovich; Peter F. Stadler (Bioinform., 2009)

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. - Michael Hackenberg; Martin Sturm; David Langenberger; Juan Manuel Falcón-Pérez; Ana M. Aransay (Nucleic Acids Res., 2009)

Identification and Classification of Small RNAs in Transcriptome Sequence Data. - David Langenberger; Clara Bermudez-Santana; Peter F. Stadler; Steve Hoffmann (Pacific Symposium on Biocomputing, 2010)

TargetSpy: a supervised machine learning approach for microRNA target prediction. - Martin Sturm; Michael Hackenberg; David Langenberger; Dmitrij Frishman (BMC Bioinform., 2010)

MicroRNA or Not MicroRNA? - David Langenberger; Sebastian Bartschat; Jana Hertel; Steve Hoffmann; Hakim Tafer; Peter F. Stadler (BSB, 2011)

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments. - Mario Fasold; David Langenberger; Hans Binder; Peter F. Stadler; Steve Hoffmann (Nucleic Acids Res., 2011)

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. - David Langenberger; Sachin Pundhir; Claus Thorn Ekstrøm; Peter F. Stadler; Steve Hoffmann; Jan Gorodkin (Bioinform., 2012)

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. - Adam Nunn; Christian Otto; Peter F. Stadler; David Langenberger (Briefings Bioinform., 2021)

Erratum to: Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. - Adam Nunn; Christian Otto; Peter F. Stadler; David Langenberger (Briefings Bioinform., 2021)