Conformational searches for the global minimum of protein models. - David M. Ferguson; Amanda Marsh; Thomas G. Metzger; David G. Garrett; Keith Kastella (J. Glob. Optim., 1994)

Parameterization and Evaluation of a Flexible Water Model. - David M. Ferguson (J. Comput. Chem., 1995)

An Analysis of the Conserved Residues between Halobacterial Retinal Proteins and G-Protein Coupled Receptors: Implications for GPCR Modeling. - Thomas G. Metzger; M. Germana Paterlini; Philip S. Portoghese; David M. Ferguson (J. Chem. Inf. Comput. Sci., 1996)

A computational analysis of interaction energies in methane and neopentane dimer systems. - Thomas G. Metzger; David M. Ferguson; William A. Glauser (J. Comput. Chem., 1997)

A combined ligand-based and target-based drug design approach for G-protein coupled receptors: application to salvinorin A, a selective kappa opioid receptor agonist. - Nidhi Singh 002; Gwénaël Chevé; David M. Ferguson; Christopher R. McCurdy (J. Comput. Aided Mol. Des., 2006)

Spectrophotometric Determination and Computational Evaluation of the Rates of Hydrolysis of 9-Amino-Substituted Acridines. - John R. Goodell; Bengt Svensson; David M. Ferguson (J. Chem. Inf. Model., 2006)