Evolutionary Techniques for Image Processing a Large Dataset of Early Drosophila Gene Expression. - Alexander V. Spirov; David M. Holloway (EURASIP J. Adv. Signal Process., 2003)

Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation. - Alexander V. Spirov; David M. Holloway (Silico Biol., 2003)

Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo. - Francisco J. P. Lopes; Fernando M. C. Vieira; David M. Holloway; Paulo Mascarello Bisch; Alexander V. Spirov (PLoS Comput. Biol., 2008)

Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations. - Alexander V. Spirov; David M. Holloway (ICCS, 2010)

Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions. - Alexander V. Spirov; David M. Holloway (IJCCI (ECTA-FCTA), 2011)

Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation. - David M. Holloway; Francisco J. P. Lopes; Luciano da Fontoura Costa; Bruno Augusto Nassif Travençolo; Nina Golyandina; Konstantin Usevich; Alexander V. Spirov (PLoS Comput. Biol., 2011)

Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback. - Alexander V. Spirov; David M. Holloway (CIBCB, 2012)

Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. - Alexander V. Spirov; Nina Golyandina; David M. Holloway; Theodore Alexandrov; Ekaterina N. Spirova; Francisco J. P. Lopes (EvoBIO, 2012)

Complexification of Gene Networks by Co-evolution of Genomes and Genomic Parasites. - David M. Holloway; Alexander B. Kazansky; Alexander V. Spirov (IJCCI, 2012)

Dynamic regulation of growing domains for elongating and branching morphogenesis in plants. - Lionel G. Harrison; Richard J. Adams; David M. Holloway (Biosyst., 2012)

Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability. - Nina Golyandina; David M. Holloway; Francisco J. P. Lopes; Alexander V. Spirov; Ekaterina N. Spirova; Konstantin Usevich (ICCS, 2012)

Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development. - Alexander V. Spirov; David M. Holloway (ICCS, 2013)

Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation. - Alexander V. Spirov; Carlos E. Vanario-Alonso; Ekaterina N. Spirova; David M. Holloway (PRIB, 2013)

In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression. - Elizaveta A. Zagrijchuk; Marat A. Sabirov; David M. Holloway; Alexander V. Spirov (J. Bioinform. Comput. Biol., 2014)

Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites. - Alexander V. Spirov; Elizaveta A. Zagriychuk; David M. Holloway (Parallel Process. Lett., 2014)

Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem. - Leonid Zamdborg; David M. Holloway; Juan Julián Merelo Guervós; Vladimir F. Levchenko; Alexander V. Spirov (Inf. Sci., 2015)

Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback. - Alexander V. Spirov; Ekaterina M. Myasnikova; David M. Holloway (J. Bioinform. Comput. Biol., 2016)

Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. - Theodore Alexandrov; Nina Golyandina; David M. Holloway; Alexander Shlemov; Alexander V. Spirov (J. Comput. Biol., 2018)

Body plan evolvability: The role of variability in gene regulatory networks. - Alexander V. Spirov; Ekaterina M. Myasnikova; David M. Holloway (J. Bioinform. Comput. Biol., 2024)