BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. - Fátima Al-Shahrour; Pablo Minguez; Joaquín Tárraga; David Montaner; Eva Alloza; Juan M. Vaquerizas; Lucía Conde; Christian Blaschke; Javier Vera; Joaquín Dopazo (Nucleic Acids Res., 2006)

Next station in microarray data analysis: GEPAS. - David Montaner; Joaquín Tárraga; Jaime Huerta-Cepas; Jordi Burguet-Castell; Juan M. Vaquerizas; Lucía Conde; Pablo Minguez; Javier Vera; Sach Mukherjee; Joan Valls; Miguel A. G. Pujana; Eva Alloza; et al. (Nucleic Acids Res., 2006)

Prophet, a web-based tool for class prediction using microarray data. - Ignacio Medina; David Montaner; Joaquín Tárraga; Joaquín Dopazo (Bioinform., 2007)

Functional profiling of microarray experiments using text-mining derived bioentities. - Pablo Minguez; Fátima Al-Shahrour; David Montaner; Joaquín Dopazo (Bioinform., 2007)

From genes to functional classes in the study of biological systems. - Fátima Al-Shahrour; Leonardo Arbiza; Hernán Dopazo; Jaime Huerta-Cepas; Pablo Minguez; David Montaner; Joaquín Dopazo (BMC Bioinform., 2007)

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. - Fátima Al-Shahrour; Pablo Minguez; Joaquín Tárraga; Ignacio Medina; Eva Alloza; David Montaner; Joaquín Dopazo (Nucleic Acids Res., 2007)

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. - Lucía Conde; David Montaner; Jordi Burguet-Castell; Joaquín Tárraga; Ignacio Medina; Fátima Al-Shahrour; Joaquín Dopazo (Nucleic Acids Res., 2007)

CLEAR-test: Combining inference for differential expression and variability in microarray data analysis. - Joan Valls; Mònica Grau; Xavier Solé; Pilar Hernández; David Montaner; Joaquín Dopazo; Miguel A. Peinado; Gabriel Capellá; Víctor Moreno; Miguel Angel Pujana (J. Biomed. Informatics, 2008)

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. - Fátima Al-Shahrour; José Carbonell; Pablo Minguez; Stefan Götz 003; Ana Conesa; Joaquín Tárraga; Ignacio Medina; Eva Alloza; David Montaner; Joaquín Dopazo (Nucleic Acids Res., 2008)

GEPAS, a web-based tool for microarray data analysis and interpretation. - Joaquín Tárraga; Ignacio Medina; José Carbonell; Jaime Huerta-Cepas; Pablo Minguez; Eva Alloza; Fátima Al-Shahrour; Susana Vegas-Azcárate; Stefan Götz 003; Pablo Escobar; Francisco García-García 002; Ana Conesa; et al. (Nucleic Acids Res., 2008)

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. - Ignacio Medina; David Montaner; Nuria Bonifaci; Miguel Angel Pujana; José Carbonell; Joaquín Tárraga; Fátima Al-Shahrour; Joaquín Dopazo (Nucleic Acids Res., 2009)

SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. - Pablo Minguez; Stefan Götz 003; David Montaner; Fátima Al-Shahrour; Joaquín Dopazo (Nucleic Acids Res., 2009)

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. - Ignacio Medina; José Carbonell; Luis Pulido; Sara C. Madeira; Stefan Götz 003; Ana Conesa; Joaquín Tárraga; Alberto D. Pascual-Montano; Rubén Nogales-Cadenas; Javier Santoyo; Francisco García-García 002; Martina Marbà; et al. (Nucleic Acids Res., 2010)

Pathway network inference from gene expression data. - Ignacio Ponzoni; María José Nueda; Sonia Tarazona; Stefan Götz 003; David Montaner; Julieta Sol Dussaut; Joaquín Dopazo; Ana Conesa (BMC Syst. Biol., 2014)

Understanding disease mechanisms with models of signaling pathway activities. - Patricia Sebastián-León; Enrique Vidal 002; Pablo Minguez; Ana Conesa; Sonia Tarazona; Alicia Amadoz; Carmen Armero; Francisco Salavert; Antonio Vidal-Puig; David Montaner; Joaquín Dopazo (BMC Syst. Biol., 2014)

Babelomics 5.0: functional interpretation for new generations of genomic data. - Roberto Alonso; Francisco Salavert; Francisco García-García 002; José Carbonell-Caballero; Marta Bleda; Luz Garcia-Alonso; Alba Sanchis-Juan; Daniel Perez-Gil; Pablo Marín-García; Rubén Sánchez 002; Cankut Çubuk; Marta R. Hidalgo; et al. (Nucleic Acids Res., 2015)

Integrated gene set analysis for microRNA studies. - Francisco García-García 002; Joaquin Panadero; Joaquín Dopazo; David Montaner (Bioinform., 2016)