A Mathematical Framework for Agent Based Models of Complex Biological Networks - Franziska Hinkelmann; David Murrugarra; Abdul Salam Jarrah; Reinhard C. Laubenbacher (CoRR, 2010)

Bifurcations in Boolean Networks. - Chris J. Kuhlman; Henning S. Mortveit; David Murrugarra; V. S. Anil Kumar 001 (Automata, 2011)

Modeling stochasticity and variability in gene regulatory networks. - David Murrugarra; Alan Veliz-Cuba; Boris Aguilar; Seda Arat; Reinhard C. Laubenbacher (EURASIP J. Bioinform. Syst. Biol., 2012)

Boolean nested canalizing functions: A comprehensive analysis. - Yuan Li; John O. Adeyeye; David Murrugarra; Boris Aguilar; Reinhard C. Laubenbacher (Theor. Comput. Sci., 2013)

Structure and dynamics of acyclic networks. - Alan Veliz-Cuba; David Murrugarra; Reinhard C. Laubenbacher (Discret. Event Dyn. Syst., 2014)

Algebraic Models and Their Use in Systems Biology. - Reinhard C. Laubenbacher; Franziska Hinkelmann; David Murrugarra; Alan Veliz-Cuba (Discrete and Topological Models in Molecular Biology, 2014)

Molecular network control through boolean canalization. - David Murrugarra; Elena S. Dimitrova (EURASIP J. Bioinform. Syst. Biol., 2015)

Identification of control targets in Boolean molecular network models via computational algebra. - David Murrugarra; Alan Veliz-Cuba; Boris Aguilar; Reinhard C. Laubenbacher (BMC Syst. Biol., 2016)

Quantifying the total effect of edge interventions in discrete multistate networks. - David Murrugarra; Elena S. Dimitrova (Autom., 2021)

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies. - David J. Wooten; Jorge Gómez Tejeda Zañudo; David Murrugarra; Austin M. Perry; Anna Dongari-Bagtzoglou; Reinhard C. Laubenbacher; Clarissa J. Nobile; Réka Albert (PLoS Comput. Biol., 2021)

Revealing the canalizing structure of Boolean functions: Algorithms and applications. - Elena S. Dimitrova; Brandilyn Stigler; Claus Kadelka; David Murrugarra (Autom., 2022)

Stability of Linear Boolean Networks. - Karthik Chandrasekhar; Claus Kadelka; Reinhard C. Laubenbacher; David Murrugarra (CoRR, 2022)

An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE. - David Murrugarra; Alan Veliz-Cuba (Patterns, 2022)