DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System. - David N. Messina; Erik L. L. Sonnhammer (Bioinform., 2009)

MetaTM - a consensus method for transmembrane protein topology prediction. - Martin Klammer; David N. Messina; Thomas Schmitt 003; Erik L. L. Sonnhammer (BMC Bioinform., 2009)

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. - Gabriel Östlund; Thomas Schmitt 003; Kristoffer Forslund; Tina Köstler; David N. Messina; Sanjit Roopra; Oliver Frings; Erik L. L. Sonnhammer (Nucleic Acids Res., 2010)

Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information. - Thomas Schmitt 003; David N. Messina; Fabian Schreiber; Erik L. L. Sonnhammer (Briefings Bioinform., 2011)