Studying the co-evolution of protein families with the Mirrortree web server. - David Ochoa; Florencio Pazos (Bioinform., 2010)

Selection of organisms for the co-evolution-based study of protein interactions. - Dorota Herman; David Ochoa; David de Juan; Daniel Lopez; Alfonso Valencia; Florencio Pazos (BMC Bioinform., 2011)

Detection of significant protein coevolution. - David Ochoa; David de Juan; Alfonso Valencia; Florencio Pazos (Bioinform., 2015)

Benchmarking substrate-based kinase activity inference using phosphoproteomic data. - Claudia Hernandez-Armenta; David Ochoa; Emanuel J. V. Gonçalves; Julio Saez-Rodriguez; Pedro Beltrão (Bioinform., 2017)

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. - Emanuel J. V. Gonçalves; Zrinka Raguz Nakic; Mattia Zampieri; Omar Wagih; David Ochoa; Uwe Sauer; Pedro Beltrão; Julio Saez-Rodriguez (PLoS Comput. Biol., 2017)

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics. - Maya Ghoussaini; Edward Mountjoy; Miguel Carmona; Gareth Peat; Ellen M. Schmidt; Andrew Hercules; Luca Fumis; Alfredo Miranda; Denise Carvalho-Silva; Annalisa Buniello; Tony Burdett; James D. Hayhurst; et al. (Nucleic Acids Res., 2021)

Open Targets Platform: supporting systematic drug-target identification and prioritisation. - David Ochoa; Andrew Hercules; Miguel Carmona; Daniel Suveges; Asier Gonzalez-Uriarte; Cinzia Malangone; Alfredo Miranda; Luca Fumis; Denise Carvalho-Silva; Michaela Spitzer; Jarrod Baker; Javier Ferrer; et al. (Nucleic Acids Res., 2021)

The next-generation Open Targets Platform: reimagined, redesigned, rebuilt. - David Ochoa; Andrew Hercules; Miguel Carmona; Daniel Suveges; Jarrod Baker; Cinzia Malangone; Irene Lopez; Alfredo Miranda; Carlos Cruz-Castillo; Luca Fumis; Manuel Bernal Llinares; Kirill Tsukanov; et al. (Nucleic Acids Res., 2023)