NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. - Kevin R. Brown; David Otasek; Muhammad Ali; Michael J. McGuffin; Wing Xie; Baiju Devani; Ian Lawson van Toch; Igor Jurisica (Bioinform., 2009)

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. - Yun Niu; David Otasek; Igor Jurisica (Bioinform., 2010)

NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs. - Amira Djebbari; Muhammad Ali; David Otasek; Max Kotlyar; Kristen Fortney; Serene Wong; Anthony Hrvojic; Igor Jurisica (Internet Math., 2011)

Visual Data Mining of Biological Networks: One Size Does Not Fit All. - Chiara Pastrello; David Otasek; Kristen Fortney; Giuseppe Agapito; Mario Cannataro; Elize Shirdel; Igor Jurisica (PLoS Comput. Biol., 2013)

Visual Data Mining: Effective Exploration of the Biological Universe. - David Otasek; Chiara Pastrello; Andreas Holzinger; Igor Jurisica (Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014)

The Cytoscape Automation app article collection. - Barry Demchak; David Otasek; Alexander R. Pico; Gary D. Bader; Keiichiro Ono; Brett Settle; Eric Sage; John H. Morris; William J. R. Longabaugh; Christian Tannus Lopes; Michael Kucera; Adam Treister; et al. (F1000Research, 2018)

Copycat Layout: Network layout alignment via Cytoscape Automation. - Brett Settle; David Otasek; John H. Morris; Barry Demchak (F1000Research, 2018)

aMatReader: Importing adjacency matrices via Cytoscape Automation. - Brett Settle; David Otasek; John H. Morris; Barry Demchak (F1000Research, 2018)