TurboTree: a fast algorithm for minimal trees. - David Penny; Michael D. Hendy (Comput. Appl. Biosci., 1987)

On the Distribution of Lengths of Evolutionary Trees. - M. Carter; Michael D. Hendy; David Penny; László A. Székely; Nicholas C. Wormald (SIAM J. Discret. Math., 1990)

The Effects of Sequence Length, Tree Topology, and Number of Taxa on the Performance of Phylogenetic Methods. - Michael A. Charleston; Michael D. Hendy; David Penny (J. Comput. Biol., 1994)

Complete Families of Linear Invariants for Some Stochastic Models of Sequence Evolution, with and without Molecular Clock Assumption. - Michael D. Hendy; David Penny (J. Comput. Biol., 1996)

Reconstructing Phylogenies From Nucleotide Pattern Probabilities: A Survey and some New Results. - Mike A. Steel; Michael D. Hendy; David Penny (Discret. Appl. Math., 1998)

What can bioinformatics contribute to explain the origin of life? - David Penny (German Conference on Bioinformatics, 1999)

Multiple maxima of likelihood in phylogenetic trees: an analytic approach. - Benny Chor; Michael D. Hendy; Barbara R. Holland; David Penny (RECOMB, 2000)

Metrics on RNA Secondary Structures. - Vincent Moulton; Michael Zuker; Mike A. Steel; Robin Pointon; David Penny (J. Comput. Biol., 2000)

Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites. - Benny Chor; Michael D. Hendy; David Penny (WABI, 2001)

A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction. - Sverker Edvardsson; Paul P. Gardner; Anthony M. Poole; Michael D. Hendy; David Penny; Vincent Moulton (Bioinform., 2003)

Two further links between MP and ML under the poisson model. - Mike A. Steel; David Penny (Appl. Math. Lett., 2004)

Searching for ncRNAs in eukaryotic genomes: Maximizing biological input with RNAmotif. - Lesley J. Collins; Thomas J. Macke; David Penny (J. Integr. Bioinform., 2004)

Analytic solutions for three taxon ML trees with variable rates across sites. - Benny Chor; Michael D. Hendy; David Penny (Discret. Appl. Math., 2007)

On the Performance of PBFT-based Permissioned Blockchain Networks in Constraint Environments. - Venkatesh Ramaswamy; David Penny (ICC, 2021)

A Fallen Line of Marble Drums. - David Penny (EVA, 2022)