Evaluation experiment of ontology tools' interoperability with the WebODE ontology engineering workbench. - Óscar Corcho; Asunción Gómez-Pérez; Danilo José Guerrero-Rodríguez; David Pérez-Rey; Alberto Ruiz-Cristina; Teresa Sastre-Toral; Mari Carmen Suárez-Figueroa (EON, 2003)

ARMEDA II: Supporting Genomic Medicine through the Integration of Medical and Genetic Databases. - Miguel García-Remesal; Victor Maojo; Holger Billhardt; José Crespo; Raúl Alonso-Calvo; David Pérez-Rey; Fernando Martin; A. Sousa (BIBE, 2004)

Biomedical Ontologies in Post-Genomic Information Systems. - David Pérez-Rey; Victor Maojo; Miguel García-Remesal; Raúl Alonso-Calvo (BIBE, 2004)

Service Oriented Architecture for Biomedical Collaborative Research. - José Antonio Heredia; Antonio Estruch; Óscar Coltell; David Rey 002; Guillermo de la Calle; Juan Sánchez; Ferran Sanz (ISBMDA, 2005)

Biomedical Image Processing Integration Through INBIOMED: A Web Services-Based Platform. - David Rey 002; José Crespo; Alberto Anguita; Juan Luis Pérez Ordóñez; Julián Dorado; Gloria Bueno García; Vicente Feliú Batlle; Antonio Estruch; José Antonio Heredia (ISBMDA, 2005)

OntoDataClean: Ontology-Based Integration and Preprocessing of Distributed Data. - David Pérez-Rey; Alberto Anguita; José Crespo (ISBMDA, 2006)

ONTOFUSION: Ontology-based integration of genomic and clinical databases. - David Pérez-Rey; Victor Maojo; Miguel García-Remesal; Raúl Alonso-Calvo; Holger Billhardt; Fernando Martín-Sánchez; A. Sousa (Comput. Biol. Medicine, 2006)

An agent- and ontology-based system for integrating public gene, protein, and disease databases. - Raúl Alonso-Calvo; Victor Maojo; Holger Billhardt; Fernando Martín-Sánchez; Miguel García-Remesal; David Pérez-Rey (J. Biomed. Informatics, 2007)

Un modelo de integración y preprocesamiento de información distribuida basado en ontologías. - David Pérez-Rey (2007)

Automatic Generation of Integration and Preprocessing Ontologies for Biomedical Sources in a Distributed Scenario. - Alberto Anguita; David Pérez-Rey; José Crespo; Victor Maojo (CBMS, 2008)

An Ontology-Based Method to Link Database Integration and Data Mining within a Biomedical Distributed KDD. - David Pérez-Rey; Victor Maojo (AIME, 2009)

c&d-Learning Implementation Architecture Adapting e-Learning to Developing Countries. - Jesús Martínez-Mateo; Susana Muñoz-Hernández; David Pérez-Rey (CSEDU (1), 2009)

PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids. - Miguel García-Remesal; Alejandro Cuevas; David Pérez-Rey; Luis Martín; Alberto Anguita; Diana de la Iglesia; Guillermo de la Calle; José Crespo; Victor Maojo (Bioinform., 2010)

A method for automatically extracting infectious disease-related primers and probes from the literature. - Miguel García-Remesal; Alejandro Cuevas; Victoria López-Alonso; Guillermo López-Campos; Guillermo de la Calle; Diana de la Iglesia; David Pérez-Rey; José Crespo; Fernando Martín-Sánchez; Victor Maojo (BMC Bioinform., 2010)

A Discussion of Thin Client Technology for Computer Labs - Jesús Martínez-Mateo; Susana Muñoz-Hernández; David Pérez-Rey (CoRR, 2010)

Biomedical Literature Retrieval Based on Patient Information. - Ana Jimenez-Castellanos; Izaskun Fernández; David Pérez-Rey; Elisa Viejo; Francisco Javier Díez 002; Xabier García de Kortazar; Miguel García-Remesal; Victor Maojo; Antonio Cobo; Francisco del Pozo (BIOSTEC (Selected Papers), 2011)

Patient-based Literature Retrieval and Integration - A Use Case for Diabetes and Arterial Hypertension. - Ana Jimenez-Castellanos; Izaskun Fernández; David Pérez-Rey; Elisa Viejo; Francisco Javier Díez 002; Xabier García de Kortazar; Miguel García-Remesal; Victor Maojo; Antonio Cobo; Francisco del Pozo (HEALTHINF, 2011)

Cloud Computing Service for Managing Large Medical Image Data-Sets Using Balanced Collaborative Agents. - Raúl Alonso-Calvo; José Crespo; Victor Maojo; Alberto Muñoz; Miguel García-Remesal; David Pérez-Rey (PAAMS, 2011)

Identifying the semantics of eligibility criteria of clinical trials based on relevant medical ontologies. - Anca I. D. Bucur; Jasper van Leeuwen; David Pérez-Rey; Raúl Alonso-Calvo; Brecht Claerhout; Kristof de Schepper (BIBE, 2012)

Nanoinformatics: developing new computing applications for nanomedicine. - Victor Maojo; Martin Fritts; Fernando Martín-Sánchez; Diana de la Iglesia; Raul E. Cachau; Miguel García-Remesal; José Crespo; Joyce A. Mitchell; Alberto Anguita; Nathan A. Baker; José María Barreiro; Sonia E. Benitez; et al. (Computing, 2012)

CDAPubMed: a browser extension to retrieve EHR-based biomedical literature. - David Pérez-Rey; Ana Jimenez-Castellanos; Miguel García-Remesal; José Crespo; Victor Maojo (BMC Medical Informatics Decis. Mak., 2012)

Leveraging Dynamic Programming Languages for Efficient Implementation of a Patient Cohort Selection Engine. - Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Raúl Alonso-Calvo; Jasper van Leeuwen; Anca I. D. Bucur (AMIA, 2013)

Implementing patient recruitment on EURECA semantic integration platform through a Groovy query engine. - Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Raúl Alonso-Calvo; Jasper van Leeuwen; Anca I. D. Bucur (BIBE, 2013)

SNOMED CT normal form and HL7 RIM binding to normalize clinical data from cancer trials. - Antonio Rico-Diez; Santiago Aso; David Pérez-Rey; Raúl Alonso-Calvo; Anca I. D. Bucur; Brecht Claerhout; Victor Maojo (BIBE, 2013)

Contextualisation of ABAC Attributes through a Generic XACML Functionality Extension Mechanism. - Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Anca I. D. Bucur (HEALTHINF, 2013)

Supporting Contextualisation of ABAC Attributes Through a Generic XACML Request Handling Mechanism. - Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Anca I. D. Bucur (BIOSTEC (Selected Papers), 2013)

Semantic Interoperability Solution for Multicentric Breast Cancer Trials at the Integrate EU Project. - Sergio Paraiso-Medina; David Pérez-Rey; Raúl Alonso-Calvo; Brecht Claerhout; Kristof de Schepper; Philippe Hennebert; Jérôme Lhaut; Jasper van Leeuwen; Anca I. D. Bucur (HEALTHINF, 2013)

Analyzing SNOMED CT and HL7 Terminology Binding for Semantic Interoperability on Post-Genomic Clinical Trials. - Santiago Aso; David Pérez-Rey; Raúl Alonso-Calvo; Antonio Rico-Diez; Anca I. D. Bucur; Brecht Claerhout; Victor Maojo (MedInfo, 2013)

A Data Model Based on Semantically Enhanced HL7 RIM for Sharing Patient Data of Breast Cancer Clinical Trials. - Juan M. Moratilla; Raúl Alonso-Calvo; Gema Molina-Vaquero; Sergio Paraiso-Medina; David Pérez-Rey; Victor Maojo (MedInfo, 2013)

Patient Screening Application to Identify Suitable Clinical Trials. - Anca I. D. Bucur; Jasper van Leeuwen; Njin-Zu Chen; Kristof de Schepper; Brecht Claerhout; David Pérez-Rey; Raúl Alonso-Calvo; Kamal Saini (AMIA, 2014)

Analysis of the Suitability of Existing Medical Ontologies for Building a Scalable Semantic Interoperability Solution Supporting Multi-site Collaboration in Oncology. - Ahmed Ibrahim; Anca I. D. Bucur; Andre Dekker; M. Scott Marshall; David Pérez-Rey; Raúl Alonso-Calvo; Holger Stenzhorn; Sheng Yu 008; Cyril Krykwinski; Anouar Laarif; Keyur Mehta (BIBE, 2014)

BRIDG-based Trial Metadata Repository - Need for Standardized Machine Interpretable Trial Descriptions. - Jasper van Leeuwen; Anca I. D. Bucur; Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Raúl Alonso-Calvo (HEALTHINF, 2014)

Supporting Patient Screening to Identify Suitable Clinical Trials. - Anca I. D. Bucur; Jasper van Leeuwen; Njin-Zu Chen; Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Raúl Alonso-Calvo; Lina Pugliano; Kamal Saini (MIE, 2014)

Cohort Selection Tool for Efficient Exploration of Patient Data. - Anca I. D. Bucur; Jasper van Leeuwen; Njin-Zu Chen; Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Sergio Paraiso-Medina; Keyur Mehta (AMIA, 2015)

Enabling semantic interoperability in multi-centric clinical trials on breast cancer. - Raúl Alonso-Calvo; David Pérez-Rey; Sergio Paraiso-Medina; Brecht Claerhout; Philippe Hennebert; Anca I. D. Bucur (Comput. Methods Programs Biomed., 2015)

Recruitment and feasibility tool. - Jasper van Leeuwen; Anca I. D. Bucur; Jeroen Keijser; Brecht Claerhout; Kristof de Schepper; David Pérez-Rey; Raúl Alonso-Calvo (J. Clin. Bioinform., 2015)

Semantic Normalization and Query Abstraction Based on SNOMED-CT and HL7: Supporting Multicentric Clinical Trials. - Sergio Paraiso-Medina; David Pérez-Rey; Anca I. D. Bucur; Brecht Claerhout; Raúl Alonso-Calvo (IEEE J. Biomed. Health Informatics, 2015)

A Machine Learning Approach to Clinical Terms Normalization. - José M. Castaño; Maria Laura Gambarte; Hee Joon Park; Maria del Pilar Avila Williams; David Pérez-Rey; Fernando Campos; Daniel R. Luna; Sonia E. Benitez; Hernán Berinsky; Sofía Zanetti (BioNLP@ACL, 2016)

Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL. - Anca I. D. Bucur; Jasper van Leeuwen; Njin-Zu Chen; David Pérez-Rey; Raúl Alonso-Calvo; Sergio Paraiso-Medina; Brecht Claerhout; Kristof de Schepper; Keyur Mehta; Cyril Krykwinski (CRI, 2016)

The INTEGRATE project: Delivering solutions for efficient multi-centric clinical research and trials. - Haridimos Kondylakis; Brecht Claerhout; Keyur Mehta; Lefteris Koumakis; Jasper van Leeuwen; Kostas Marias; David Pérez-Rey; Kristof de Schepper; Manolis Tsiknakis; Anca I. D. Bucur (J. Biomed. Informatics, 2016)

A semantic interoperability approach to support integration of gene expression and clinical data in breast cancer. - Raúl Alonso-Calvo; Sergio Paraiso-Medina; David Pérez-Rey; Enrique Alonso-Oset; Ruud van Stiphout; Sheng Yu 008; Marian Taylor; Francesca Buffa; Carlos Fernandez-Lozano; Alejandro Pazos; Victor Maojo (Comput. Biol. Medicine, 2017)

SNOMED2HL7: A tool to normalize and bind SNOMED CT concepts to the HL7 Reference Information Model. - David Pérez-Rey; Raúl Alonso-Calvo; Sergio Paraiso-Medina; Cristian R. Munteanu; Miguel García-Remesal (Comput. Methods Programs Biomed., 2017)

A Machine Translation Approach for Medical Terms. - Alejandro Renato; José M. Castaño; Maria del Pilar Avila Williams; Hernán Berinsky; Maria Laura Gambarte; Hee Joon Park; David Pérez-Rey; Carlos Otero; Daniel R. Luna (HEALTHINF, 2018)

Selection of Semantic Relevant Healthcare Services Subsets. - Pilar Ávila; José M. Castaño; Hernán Berinsky; Maria Laura Gambarte; Hee Joon Park; David Pérez-Rey; Carlos Otero; Mario Albornoz; Daniel R. Luna (MIE, 2018)

ICD-10-PCS extension with ICD-9 procedure codes to support integrated access to clinical legacy data. - Gema Hernandez-Ibarburu; David Pérez-Rey; Enrique Alonso-Oset; Raúl Alonso-Calvo; David Voets; Christina Mueller; Brecht Claerhout (Int. J. Medical Informatics, 2019)

ICD-10-CM extension with ICD-9 diagnosis codes to support integrated access to clinical legacy data. - Gema Hernandez-Ibarburu; David Pérez-Rey; Enrique Alonso-Oset; Raúl Alonso-Calvo; Kristof de Schepper; Laura Meloni; Brecht Claerhout (Int. J. Medical Informatics, 2019)

Building an I2B2-Based Population Repository for Clinical Research. - Lydia González; David Pérez-Rey; Enrique Alonso-Oset; Gema Hernández; Pablo Serrano; Miguel Pedrera-Jiménez; Agustín Gómez; Kristof de Schepper; Titus Crepain; Brecht Claerhout (MIE, 2020)

Mapping clinical procedures to the ICD-10-PCS: The German operation and procedure classification system use case. - A. Millan-Fernandez-Montes; David Pérez-Rey; Gema Hernandez-Ibarburu; Matvey B. Palchuk; Christina Mueller; Brecht Claerhout (J. Biomed. Informatics, 2020)

Building an i2b2-Based Population Repository for COVID-19 Research. - Miguel Pedrera-Jiménez; Noelia García-Barrio; Gema Hernandez-Ibarburu; Blanca Baselga; Alvar Javier Blanco-Martínez; Fernando Calvo-Boyero; Alba Gutiérrez-Sacristán; Víctor Quiros; Juan Luis Cruz-Bermúdez; José Luis Bernal-Sobrino; Laura Meloni; David Pérez-Rey; et al. (MIE, 2022)

Automatic Outlier Detection in Laboratory Result Distributions Within a Real World Data Network. - Aída Muñoz Monjas; David Rubio Ruiz; David Pérez-Rey; Matvey B. Palchuk (MIE, 2023)

Enhancing real world data interoperability in healthcare: A methodological approach to laboratory unit harmonization. - Aída Muñoz Monjas; David Rubio Ruiz; David Pérez del Rey; Matvey B. Palchuk (Int. J. Medical Informatics, 2025)