Strand-seq enables reliable separation of long reads by chromosome via expectation maximization. - Maryam Ghareghani; David Porubsky; Ashley D. Sanders; Sascha Meiers; Evan E. Eichler; Jan O. Korbel; Tobias Marschall (Bioinform., 2018)

breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data. - David Porubsky; Ashley D. Sanders; Aaron Taudt; Maria Colomé-Tatché; Peter M. Lansdorp; Victor Guryev (Bioinform., 2020)

GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. - Philip C. Dishuck; Allison N. Rozanski; Glennis Logsdon; David Porubsky; Evan E. Eichler (Bioinform., 2023)