GridMAT-MD: A grid-based membrane analysis tool for use with molecular dynamics. - William J. Allen; Justin A. Lemkul; David R. Bevan (J. Comput. Chem., 2009)

Practical Considerations for Building GROMOS-Compatible Small-Molecule Topologies. - Justin A. Lemkul; William J. Allen; David R. Bevan (J. Chem. Inf. Model., 2010)

A new functional association-based protein complex prediction. - Mingming Liu 006; Yanwei Huang; Liqing Zhang 002; David R. Bevan (BIBM Workshops, 2011)

Pharmacophore modeling improves virtual screening for novel peroxisome proliferator-activated receptor-gamma ligands. - Stephanie N. Lewis; Zulma Garcia; Raquel Hontecillas; Josep Bassaganya-Riera; David R. Bevan (J. Comput. Aided Mol. Des., 2015)

Insights into Alzheimer's Disease: Molecular Dynamics (MD) Simulations of Peptide-Membrane Interactions. - Anne M. Brown; Nicholas F. Polys; David R. Bevan; Ayat Mohammed (XSEDE, 2016)

Introducing Protein 3-D Visualization Software to Freshman Undergraduate Students: Making Connections and Building Skills. - Anne M. Brown; David R. Bevan (PEARC, 2017)

Utilizing Computational Techniques to Accelerate Discovery in Peanut Allergenicity: A Case Study. - L. R. Hollingsworth IV; Anne M. Brown; David R. Bevan (PEARC, 2017)

Using Immersive Visualization Environments to Engage Students in Hands-On Learning. - Hannah K. Ricketts; Alexa M. Salsbury; David R. Bevan; Anne M. Brown (PEARC, 2018)

In Silico Characterization of Structural Distinctions between Isoforms of Human and Mouse Sphingosine Kinases for Accelerating Drug Discovery. - Brittney L. Worrell; Anne M. Brown; Webster L. Santos; David R. Bevan (J. Chem. Inf. Model., 2019)