Evaluation of search strategies and cost functions in optimizing voxel-based image registration. - David Richard Holmes; Jon J. Camp; Richard A. Robb (Image Processing, 1997)

Quantitative image analysis of histological sections of coronary arteries. - David Richard Holmes; Richard A. Robb (Image Processing, 2000)

Trans-urethral Ultrasound: A New Tool for Diagnostic and Therapeutic Imaging in Prostate Cancer. - David R. Holmes III; Brian J. Davis; Richard A. Robb (MICCAI, 2001)

Transurethral ultrasound of the prostrate for applications in prostrate brachytherapy: analysis of phantom and in-vivo data. - David Richard Holmes; Brian J. Davis; Charles Bruce; Torrence M. Wilson; Richard A. Robb (Image-Guided Procedures, 2001)

Rapid semi-automated segmentation and analysis of neuronal morphology and function from confocal image data. - David R. Holmes III; M. J. Moore; Carlos B. Mantilla; Gary C. Sieck; Richard A. Robb (ISBI, 2002)

Real-Time Segmentation of Trans-urethral Ultrasound Images for Prostate Brachytherapy. - David R. Holmes III; Richard A. Robb (MICCAI (2), 2003)

Analysis of elastography methods using mathematical and ex vivo data. - Brett C. Byram; Michael R. Wahl; David Richard Holmes; Amir Lerman; Richard A. Robb (Image Processing, 2003)

ITK and ANALYZE: a synergistic integration. - Kurt E. Augustine; David R. Holmes III; Richard A. Robb (Image-Guided Procedures, 2004)

Improved automated brachytherapy seed localization in trans-urethral ultrasound data. - David R. Holmes III; Richard A. Robb (Image-Guided Procedures, 2004)

Parametric modeling for quantitative analysis of pulmonary structure to function relationships. - Clifton R. Haider; Brian J. Bartholmai; David R. Holmes 001; Jon J. Camp; Richard A. Robb (Image-Guided Procedures, 2005)

Design of a Compact System Using a MEMS Accelerometer to Measure Body Posture and Ambulation. - Kara E. Bliley; Daniel J. Schwab; David R. Holmes III; Paul H. Kane; James A. Levine; Erik S. Daniel; Barry K. Gilbert (CBMS, 2006)

Evaluation of global versus piecewise registration using a ground truth canine model. - Maryam E. Rettmann; David R. Holmes III; Yi Su; Mark W. Kolasa; Susan B. Johnson; Douglas L. Packer; Richard A. Robb (ISBI, 2006)

Comprehensive, powerful, efficient, intuitive: a new software framework for clinical imaging applications. - Kurt E. Augustine; David R. Holmes 001; Dennis P. Hanson; Richard A. Robb (Image-Guided Procedures, 2006)

Volumetric CT measurement of the ischial tuberosities for designing analytical models of decubitus ulcers. - David R. Holmes 001; Richard A. Robb (Image-Guided Procedures, 2006)

A piecewise function-to-structure registration algorithm for image guided cardiac catheter ablation. - Yi Su; David R. Holmes 001; Maryam E. Rettmann; Richard A. Robb (Image-Guided Procedures, 2006)

Optimization of spine surgery planning with 3D image templating tools. - Kurt E. Augustine; Paul M. Huddleston; David R. Holmes III; Shyam M. Shridharani; Richard A. Robb (Image-Guided Procedures, 2008)

Dual energy CT: How to best blend both energies in one fused image? - Christian Dieter Eusemann; David R. Holmes 001; Bernhard Schmidt; Thomas G. Flohr; Richard A. Robb; Cynthia H. McCollough; David M. Hough; James E. Huprich; Michael Wittmer; Hasan Siddiki; Joel G. Fletcher (Image-Guided Procedures, 2008)

Developing patient-specific anatomic models for validation of cardiac ablation guidance procedures. - David R. Holmes 001; Maryam E. Rettmann; Bruce M. Cameron; Jon J. Camp; Richard A. Robb (Image-Guided Procedures, 2008)

Patient Specific Physical Anatomy Models. - Bruce M. Cameron; David R. Holmes III; Maryam E. Rettmann; Richard A. Robb (MMVR, 2008)

A Combined Surface and Volumetric Approach for Registration of Patient Specific Models into Left Atrial Cardiac Ablation Procedures. - Maryam E. Rettmann; David R. Holmes III; Charles Dalegrave; Christopher Stanton; Susan B. Johnson; Douglas L. Packer; Richard A. Robb (ISBI, 2009)

Evaluating optimal CNR as a preset criteria for nonlinear moidal blending of dual energy CT data. - David R. Holmes III; A. Apel; Joel G. Fletcher; L. S. Guimaraes; C. E. Eusemann; Richard A. Robb (Image-Guided Procedures, 2009)

Real-time video fusion using a distributed architecture in robotic surgery. - David M. Kwartowitz; Maryam E. Rettmann; David R. Holmes III; Richard A. Robb (Image-Guided Procedures, 2009)

An event-driven distributed processing architecture for image-guided cardiac ablation therapy. - Maryam E. Rettmann; David R. Holmes III; Bruce M. Cameron; Richard A. Robb (Comput. Methods Programs Biomed., 2009)

Mapping High-Fidelity Volume Rendering for Medical Imaging to CPU, GPU and Many-Core Architectures. - Mikhail Smelyanskiy; David R. Holmes III; Jatin Chhugani; Alan Larson; Doug Carmean; Dennis P. Hanson; Pradeep Dubey; Kurt Augustine; Daehyun Kim 001; Alan Kyker; Victor W. Lee; Anthony D. Nguyen; et al. (IEEE Trans. Vis. Comput. Graph., 2009)

Plan to procedure: combining 3D templating with rapid prototyping to enhance pedicle screw placement. - Kurt E. Augustine; Anthony A. Stans; Jonathan M. Morris; Paul M. Huddleston; Jane M. Matsumoto; David R. Holmes III; Richard A. Robb (Image-Guided Procedures, 2010)

A novel technique for analysis of accuracy of magnetic tracking systems used in image guided surgery. - David M. Kwartowitz; Maryam E. Rettmann; David R. Holmes III; Richard A. Robb (Image-Guided Procedures, 2010)

Enhanced Planning of Interventions for Spinal Deformity Correction Using Virtual Modeling and Visualization Techniques. - Cristian A. Linte; Kurt Augustine; Paul M. Huddleston; Anthony A. Stans; David R. Holmes III; Richard A. Robb (AE-CAI, 2011)

Expansion and dissemination of a standardized accuracy and precision assessment technique. - David M. Kwartowitz; Rachel E. Riti; David R. Holmes III (Image-Guided Procedures, 2011)

Incorporating a Gaussian model at the catheter tip for improved registration of preoperative surface models. - Maryam E. Rettmann; David R. Holmes III; Douglas L. Packer; Richard A. Robb (Image-Guided Procedures, 2011)

Fast Adaptation of Pre-Operative Patient Specific Models to Real-Time Intra-Operative Volumetric Data Streams. - Bruce M. Cameron; Maryam E. Rettmann; David R. Holmes III; Richard A. Robb (MMVR, 2011)

A piecewise patch-to-model matching method for image-guided cardiac catheter ablation. - Jiquan Liu; Maryam E. Rettmann; David R. Holmes III; Huilong Duan; Richard A. Robb (Comput. Medical Imaging Graph., 2011)

Keynote address: Clinical Decision Support: The challenge of big data and big computation. - David R. Holmes 001 (IISWC, 2012)

Quantification of pulmonary vein morphology using centerline tracking. - Maryam E. Rettmann; Mia S. Gunawan; David R. Holmes III; Douglas L. Packer; Richard A. Robb (ISBI, 2012)

Modeling of Radiofrequency Ablation Lesions for Image-Guided Arrhythmia Therapy: A Preliminary ex vivo Demonstration. - Cristian A. Linte; Jon J. Camp; David R. Holmes III; Maryam E. Rettmann; Richard A. Robb (AE-CAI, 2012)

Calibration and evaluation of a magnetically tracked ICE probe for guidance of left atrial ablation therapy. - Cristian A. Linte; Maryam E. Rettmann; Ben Dilger; Mia S. Gunawan; Shivaram Poigai Arunachalam; David R. Holmes III; Douglas L. Packer; Richard A. Robb (Image-Guided Procedures, 2012)

Augmented Environments for Minimally Invasive Therapy: Implementation Barriers from Technology to Practice. - Cristian A. Linte; Katherine P. Davenport; Kevin Cleary; Craig A. Peters; Kirby G. Vosburgh; Philip J. Edwards; Pierre Jannin; Terry M. Peters; David R. Holmes III; Richard A. Robb (MMVR, 2012)

Accuracy considerations in image-guided cardiac interventions: experience and lessons learned. - Cristian A. Linte; Pencilla Lang; Maryam E. Rettmann; Daniel S. Cho; David R. Holmes III; Richard A. Robb; Terry M. Peters (Int. J. Comput. Assist. Radiol. Surg., 2012)

Toward Online Modeling for Lesion Visualization and Monitoring in Cardiac Ablation Therapy. - Cristian A. Linte; Jon J. Camp; David R. Holmes III; Maryam E. Rettmann; Richard A. Robb (MICCAI (1), 2013)

3D-3D registration of partial capitate bones using spin-images. - Ryan E. Breighner; David R. Holmes III; Shuai Leng; Kai-Nan An; Cynthia H. McCollough; Kristin D. Zhao (Image-Guided Procedures, 2013)

Image-based modeling and characterization of RF ablation lesions in cardiac arrhythmia therapy. - Cristian A. Linte; Jon J. Camp; Maryam E. Rettmann; David R. Holmes III; Richard A. Robb (Image-Guided Procedures, 2013)

Segmentation of left atrial intracardiac ultrasound images for image guided cardiac ablation therapy. - Maryam E. Rettmann; T. Stephens; David R. Holmes III; Cristian A. Linte; Douglas L. Packer; Richard A. Robb (Image-Guided Procedures, 2013)

Toward Modeling of Radio-frequency Ablation Lesions for Image-guided Left Atrial Fibrillation Therapy: Model Formulation and Preliminary Evaluation. - Cristian A. Linte; Jon J. Camp; David R. Holmes III; Maryam E. Rettmann; Douglas L. Packer; Richard A. Robb (MMVR, 2013)

On mixed reality environments for minimally invasive therapy guidance: Systems architecture, successes and challenges in their implementation from laboratory to clinic. - Cristian A. Linte; Katherine P. Davenport; Kevin Cleary; Craig A. Peters; Kirby G. Vosburgh; Nassir Navab; Philip J. Edwards; Pierre Jannin; Terry M. Peters; David R. Holmes III; Richard A. Robb (Comput. Medical Imaging Graph., 2013)

Lessons learned from the semantic translation of healthcare data. - Robert W. Techentin; Jennifer St Sauver; Jeanne Huddleston; Barry K. Gilbert; David R. Holmes 001 (Healthcom, 2014)

Characterization of semi-synthetic dataset for big-data semantic analysis. - Robert W. Techentin; Daniel Foti; Sinan Al-Saffar; Peter Li; Erik S. Daniel; Barry K. Gilbert; David R. Holmes 001 (HPEC, 2014)

Quantitative characterization of brain β-amyloid using a joint PiB/FDG PET image histogram. - Jon J. Camp; Dennis P. Hanson; David R. Holmes III; Bradley J. Kemp; Matthew L. Senjem; Melissa E. Murray; Dennis W. Dickson; Joseph E. Parisi; Ronald C. Petersen; Val J. Lowe; Richard A. Robb (Computer-Aided Diagnosis, 2014)

Virtual estimates of fastening strength for pedicle screw implantation procedures. - Cristian A. Linte; Jon J. Camp; Kurt E. Augustine; Paul M. Huddleston; Richard A. Robb; David R. Holmes III (Image-Guided Procedures, 2014)

Toward standardized mapping for left atrial analysis and cardiac ablation guidance. - Maryam E. Rettmann; David R. Holmes III; Cristian A. Linte; Douglas L. Packer; Richard A. Robb (Image-Guided Procedures, 2014)

Updating a preoperative surface model with information from real-time tracked 2D ultrasound using a Poisson surface reconstruction algorithm. - Deyu Sun; Maryam E. Rettmann; David R. Holmes III; Cristian A. Linte; Douglas L. Packer; Richard A. Robb (Image-Guided Procedures, 2014)

Anatomic Surface Reconstruction from Sampled Point Cloud Data and Prior Models. - Deyu Sun; Maryam E. Rettmann; David R. Holmes III; Cristian A. Linte; Bruce M. Cameron; Jiquan Liu; Douglas L. Packer; Richard A. Robb (MMVR, 2014)

Development of a Semi-synthetic Dataset as a Testbed for Big-Data Semantic Analytics. - Robert W. Techentin; Daniel Foti; Peter Li; Erik S. Daniel; Barry K. Gilbert; David R. Holmes 001; Sinan Al-Saffar (ICSC, 2014)

Simulated imaging of atherosclerotic & radiofrequency ablation lesions using phase subtraction. - John R. Jameson; David R. Holmes III; Benjamin R. Buhrow; Erik S. Daniel; Barry K. Gilbert; Clifton R. Haider (EMBC, 2015)

The effect of elastic modulus on ablation catheter contact area. - Jon J. Camp; Cristian A. Linte; Maryam E. Rettmann; Deyu Sun; Douglas L. Packer; Richard A. Robb; David R. Holmes III (Image-Guided Procedures, 2015)

Analysis of left atrial respiratory and cardiac motion for cardiac ablation therapy. - Maryam E. Rettmann; David R. Holmes III; Susan B. Johnson; H. I. Lehmann; Richard A. Robb; Douglas L. Packer (Image-Guided Procedures, 2015)

Simulated evaluation of an intraoperative surface modeling method for catheter ablation by a real phantom simulation experiment. - Deyu Sun; Maryam E. Rettmann; Douglas L. Packer; Richard A. Robb; David R. Holmes III (Image-Guided Procedures, 2015)

Estimating pedicle screw fastening strength via a virtual templating platform for spine surgery planning: a retrospective preliminary clinical demonstration. - Cristian A. Linte; Jon J. Camp; Kurt Augustine; Paul M. Huddleston; Richard A. Robb; David R. Holmes III (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2015)

Measurements of the left atrium and pulmonary veins for analysis of reverse structural remodeling following cardiac ablation therapy. - Maryam E. Rettmann; David R. Holmes III; Jerome F. Breen; Xin Ge; Ronald A. Karwoski; Kristi H. Monahan; Tristram D. Bahnson; Douglas L. Packer; Richard A. Robb (Comput. Methods Programs Biomed., 2015)

Towards real-time QRS feature extraction for wearable monitors. - Lukás Smital; Clifton R. Haider; Pavel Leinveber; Pavel Jurák; Barry K. Gilbert; David R. Holmes 001 (EMBC, 2016)

Quantitative characterization of brain β-amyloid in 718 normal subjects using a joint PiB/FDG PET image histogram. - Jon J. Camp; Dennis P. Hanson; Val J. Lowe; Bradley J. Kemp; Matthew L. Senjem; Melissa E. Murray; Dennis W. Dickson; Joseph E. Parisi; Ronald C. Petersen; Richard A. Robb; David R. Holmes III (Computer-Aided Diagnosis, 2016)

Feasibility of tracked electrodes for use in epilepsy surgery. - David R. Holmes 001; Benjamin H. Brinkmann; Dennis P. Hanson; Gregory A. Worrell; Richard A. Robb; Leslie Holton (Image-Guided Procedures, 2016)

Relative accuracy of spin-image-based registration of partial capitate bones in 4DCT of the wrist. - Ryan E. Breighner; David R. Holmes III; Shuai Leng; Kai-Nan An; Cynthia H. McCollough; Kristin D. Zhao (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2016)

Efficient implementation of Stockwell Transform for real-time embedded processing of physiologic signals. - David R. Holmes 001; Samuel Cerqueira Pinto; Christopher Felton; Lukás Smital; Pavel Leinveber; Pavel Jurák; Barry K. Gilbert; Clifton R. Haider (EMBC, 2017)

Clinical accuracy QRS detector with automatic parameter adjustment in an autonomous, real-time physiologic monitor. - Samuel Cerqueira Pinto; Christopher Felton; Lukás Smital; Barry K. Gilbert; David R. Holmes III; Clifton R. Haider (GlobalSIP, 2017)

On the Design of a Physiological Signal Feature Extraction and Segmentation Digital Subsystem. - Christopher L. Felton; Barry K. Gilbert; David R. Holmes 001; Clifton R. Haider (ACSSC, 2018)

Stockwell Transform Detector For Photoplethysmography Signal Segmentation. - Victoria S. Marks; Christopher L. Felton; Robert W. Techentin; Barry K. Gilbert; Victor A. Convertino; Michael J. Joyner; Timothy B. Curry; David R. Holmes 001; Clifton R. Haider (ACSSC, 2018)

Technical note: on cardiac ablation lesion visualization for image-guided therapy monitoring. - Cristian A. Linte; Jon J. Camp; Maryam E. Rettmann; Dieter Haemmerich; Mehmet K. Aktas; David T. Huang; Douglas L. Packer; David R. Holmes III (Image-Guided Procedures, 2018)

Towards Estimation of Three-Dimensional Knee Rotations. - April L. McPherson; Christopher L. Felton; Rena Hale; Barry K. Gilbert; Nathan D. Schilaty; Timothy E. Hewett; David R. Holmes 001; Clifton R. Haider (ACSSC, 2019)

1D Convolutional Neural Networks for Estimation of Compensatory Reserve from Blood Pressure Waveforms. - Robert W. Techentin; Christopher L. Felton; Taylor E. Schlotman; Barry K. Gilbert; Michael J. Joyner; Timothy B. Curry; Victor A. Convertino; David R. Holmes 001; Clifton R. Haider (EMBC, 2019)

Pre- and Post-processing Strategies for Generic Slice-wise Segmentation of Tomographic 3D Datasets Utilizing U-Net Deep Learning Models Trained for Specific Diagnostic Domains. - Gerald A. Zwettler; Werner Backfrieder; David R. Holmes III (VISIGRAPP (5: VISAPP), 2020)

Strategies for Training Deep Learning Models in Medical Domains with Small Reference Datasets. - Gerald A. Zwettler; David R. Holmes III; Werner Backfrieder (J. WSCG, 2020)

Real-Time Quality Assessment of Long-Term ECG Signals Recorded by Wearables in Free-Living Conditions. - Lukás Smital; Clifton R. Haider; Martin Vítek; Pavel Leinveber; Pavel Jurák; Andrea Nemcová; Radovan Smísek; Lucie Marsánová; Ivo Provazník; Christopher L. Felton; Barry K. Gilbert; David R. Holmes III (IEEE Trans. Biomed. Eng., 2020)

Optimizing Web-Based Viewer of 4D CT Scans for Clinical Assessment of Injured Wrists *. - David R. Holmes 001; Andrew R. Thoreson; Ryan E. Breighner; Sanjeev Kakar; Steven L. Moran; Shuai Leng; Kristin D. Zhao (EMBC, 2021)

Generic User-guided Interaction Paradigm for Precise Post-slice-wise Processing of Tomographic Deep Learning Segmentations Utilizing Graph Cut and Graph Segmentation. - Gerald A. Zwettler; Werner Backfrieder; Ronald A. Karwoski; David R. Holmes III (VISIGRAPP (4: VISAPP), 2021)

Deep neural network for cell type differentiation in myelodysplastic syndrome diagnosis performs similarly when trained on compensated or uncompensated data. - Jon Camp; Gregory Otteson; Jansen Seheult; Min Shi; Dragan Jevremovic; Horatiu Olteanu; Ahmad Nanaa; Aref Al-Kali; Mohamed Salama; David R. Holmes III (Digital and Computational Pathology, 2022)

Individualized and generalized learner models for predicting missed hepatic metastases. - Parvathy Sudhir Pillai; Scott S. Hsieh; David R. Holmes III; Rickey E. Carter; Joel G. Fletcher; Cynthia H. McCollough (Image Perception, Observer Performance, and Technology Assessment, 2022)

AI-Enabled Advanced Development for Assessing Low Circulating Blood Volume for Emergency Medical Care: Comparison of Compensatory Reserve Machine-Learning Algorithms. - Victor A. Convertino; Robert W. Techentin; Ruth J. Poole; Ashley C. Dacy; Ashli N. Carlson; Sylvain Cardin; Clifton R. Haider; David R. Holmes III; Chad C. Wiggins; Michael J. Joyner; Timothy B. Curry; Omer T. Inan (Sensors, 2022)

Generalizing and Mapping Actigraphy Based Sleep Detection Algorithms. - Christopher L. Felton; Kaylah Berndt; Michelle Grady; David R. Holmes 001; Clifton R. Haider (ACSSC, 2023)

Identification of Sleep Patterns via Clustering of Hypnodensities. - Joshua R. Mirth; Christopher L. Felton; Clifton R. Haider; Stuart J. McCarter; Timothy I. Morgenthaler; Erik K. St. Louis; David R. Holmes 001 (EMBC, 2023)

Towards a Lightweight Classifier to Detect Hypovolemic Shock. - Leena Pramanik; Christopher L. Felton; Robert W. Techentin; David R. Holmes 001; Timothy B. Curry; Michael J. Joyner; Victor A. Convertino; Clifton R. Haider (EMBC, 2023)

Development of a biomechanical monitoring system for flexible ureteroscopy. - Laura Torre; Nicholas Hugenberg; Jayson Kemble; Kevin Koo; David R. Holmes III (Image-Guided Procedures, 2023)

A training program to reduce reader search errors for liver metastasis detection in CT. - Scott S. Hsieh; Akitoshi Inoue; Mariana Yalon; David A. Cook; Jeff L. Fidler; Hao Gong 003; Parvathy Sudhir Pillai; Andrew J. Vercnocke; Matthew P. Johnson; Shuai Leng; Lifeng Yu; David R. Holmes III; et al. (Image Perception, Observer Performance, and Technology Assessment, 2023)

Joint fusion of EHR and ECG data using attention-based CNN and ViT for predicting adverse clinical endpoints in percutaneous coronary intervention patients. - Arjun Thakur; Pradyumna Agasthi; Chieh-Ju Chao; Juan Maria Farina; David R. Holmes 001; David F. Fortuin; Chadi Ayoub; Reza Arsanjani; Imon Banerjee (Comput. Biol. Medicine, 2025)

Regional variation in cerebral oxygen metabolism during acute severe hypoxia with temporary cognitive impairment. - Daehun Kang; Koji Uchida; Clifton R. Haider; Norbert G. Campeau; Myung-Ho In; Erin M. Gray; Joshua D. Trzasko; Kirk M. Welker; Jeffrey L. Gunter; Matt A. Bernstein; Max R. Trenerry; David R. Holmes 001; et al. (NeuroImage, 2025)