CONCH: A Visual Basic program for interactive processing of ion-microprobe analytical data. - David R. Nelson (Comput. Geosci., 2006)

Genome Landscapes and Bacteriophage Codon Usage. - Julius B. Lucks; David R. Nelson; Grzegorz R. Kudla; Joshua B. Plotkin (PLoS Comput. Biol., 2008)

Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment. - Osamu Gotoh; Mariko Morita; David R. Nelson (BMC Bioinform., 2014)

How Obstacles Perturb Population Fronts and Alter Their Genetic Structure. - Wolfram Möbius; Andrew W. Murray; David R. Nelson (PLoS Comput. Biol., 2015)

Successes and Challenges in Developing and Implementing Electronic Informed Consent Tools for Research. - Christopher A. Harle; David R. Nelson; Kenneth W. Goodman; Elizabeth Bell (AMIA, 2017)

Genetic drift and selection in many-allele range expansions. - Bryan T. Weinstein; Maxim O. Lavrentovich; Wolfram Möbius; Andrew W. Murray; David R. Nelson (PLoS Comput. Biol., 2017)

Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials. - Hansi Zhang; Zhe He 001; Xing He 003; Yi Guo 005; David R. Nelson; François Modave; Yonghui Wu; William R. Hogan; Mattia Prosperi; Jiang Bian 001 (AMIA, 2018)

LA4SR: illuminating the dark proteome with generative AI. - David R. Nelson; Ashish Kumar Jaiswal; Noha Ismail; Alexandra Mystikou; Kourosh Salehi-Ashtiani (CoRR, 2024)