A Study of Semantic Proximity between Archetype Terms Based on SNOMED CT Relationships. - José Luis Iglesias Allones; David R. Penas; Maria Taboada; Diego Martínez Hernández; Serafín Tellado (ProHealth/KR4HC, 2012)

A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems. - David R. Penas; Julio R. Banga; Patricia González; Ramon Doallo (PACBB, 2014)

Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method. - David R. Penas; Patricia González; Jose A. Egea; Julio R. Banga; Ramon Doallo (ICCS, 2015)

Enhanced parallel Differential Evolution algorithm for problems in computational systems biology. - David R. Penas; Julio R. Banga; Patricia González; Ramon Doallo (Appl. Soft Comput., 2015)

Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark. - Diego Teijeiro; Xoán C. Pardo; David R. Penas; Patricia González; Julio R. Banga; Ramón Doallo (Euro-Par Workshops, 2016)

Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study. - Patricia González; Xoán C. Pardo; David R. Penas; Diego Teijeiro; Julio R. Banga; Ramón Doallo (CCGrid, 2017)

Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy. - David R. Penas; Patricia González; Jose A. Egea; Ramón Doallo; Julio R. Banga (BMC Bioinform., 2017)

A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology. - Diego Teijeiro; Xoán C. Pardo; David R. Penas; Patricia González; Julio R. Banga; Ramón Doallo (Clust. Comput., 2017)

Multimethod Optimization for Reverse Engineering of Complex Biological Networks. - Patricia González; David R. Penas; Xoán C. Pardo; Julio R. Banga; Ramón Doallo (PBio@EuroMPI, 2018)

Multimethod optimization in the cloud: A case-study in systems biology modelling. - Patricia González; David R. Penas; Xoán C. Pardo; Julio R. Banga; Ramón Doallo (Concurr. Comput. Pract. Exp., 2018)

Enhanced global optimization methods applied to complex fisheries stock assessment models. - David R. Penas; Andrés Gómez 002; Basilio B. Fraguela; María J. Martín; Santiago Cerviño (Appl. Soft Comput., 2019)

Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology. - Patricia González; Pablo Argüeso-Alejandro; David R. Penas; Xoán C. Pardo; Julio Saez-Rodriguez; Julio R. Banga; Ramón Doallo (J. Supercomput., 2019)

A metaheuristic penalty approach for the starting point in nonlinear programming. - David R. Penas; Marcos Raydan (RAIRO Oper. Res., 2020)

A new two-phase heuristic for a problem of food distribution with compartmentalized trucks and trailers. - Laura Davila-Pena; David R. Penas; Balbina Casas-Méndez (Int. Trans. Oper. Res., 2023)

Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants. - Ahmed Taha; Mauricio Patón; David R. Penas; Julio R. Banga; Jorge Rodríguez (PLoS Comput. Biol., 2023)

Computational advances in polynomial optimization: RAPOSa, a freely available global solver. - Brais González-Rodríguez; Joaquín Ossorio-Castillo; Julio González-Díaz; Ángel Manuel González-Rueda; David R. Penas; Diego Rodríguez Martínez (J. Glob. Optim., 2023)

Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers. - David R. Penas; Meysam Hashemi; Viktor K. Jirsa; Julio R. Banga (PLoS Comput. Biol., 2024)

Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells. - Paul F. Lang; David R. Penas; Julio R. Banga; Daniel Weindl; Béla Novák (PLoS Comput. Biol., 2024)