Molecular applications of volume rendering and 3-D texture maps. - David S. Goodsell; Arthur J. Olson (VVS, 1989)

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4. - Garrett M. Morris; David S. Goodsell; Ruth Huey; Arthur J. Olson (J. Comput. Aided Mol. Des., 1996)

Design of stapled DNA-minor-groove-binding molecules with a mutable atom simulated annealing method. - Wynn L. Walker; Mary L. Kopka; Richard E. Dickerson; David S. Goodsell (J. Comput. Aided Mol. Des., 1997)

The theoretical limits of DNA sequence discrimination of polyamides. - Wynn L. Walker; David S. Goodsell; Elliot M. Landaw (RECOMB, 1998)

Computational Coevolution of Antiviral Drug Resistance. - Christopher D. Rosin; Richard K. Belew; Garrett M. Morris; Arthur J. Olson; David S. Goodsell (Artif. Life, 1998)

An Analysis of a Class of DNA Sequence Reading Molecules. - Wynn L. Walker; David S. Goodsell; Elliot M. Landaw (J. Comput. Biol., 1998)

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. - Garrett M. Morris; David S. Goodsell; Robert S. Halliday; Ruth Huey; William E. Hart; Richard K. Belew; Arthur J. Olson (J. Comput. Chem., 1998)

Atomistic vs. Continuous Representations in Molecular Biology. - David S. Goodsell (Visual Representations and Interpretations, 1999)

Modeling HIV. - Teresa Larsen; David S. Goodsell; Dru Clark; Ernest Stewart (SIGGRAPH Abstracts and Applications, 1999)

BioEditor - Simplifying Macromolecular Structure Annotation. - Peng Yang; Paul A. Craig; David S. Goodsell; Philip E. Bourne (Bioinform., 2003)

Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling. - Robin J. Rosenfeld; David S. Goodsell; Rabi A. Musah; Garrett M. Morris; David B. Goodin; Arthur J. Olson (J. Comput. Aided Mol. Des., 2003)

Computer-linked autofabricated 3D models for teaching structural biology. - Alexandre Gillet; Suzanne Weghorst; William Winn; Daniel Stoffler; Michel F. Sanner; David S. Goodsell; Arthur J. Olson (SIGGRAPH Sketches, 2004)

Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; David S. Goodsell; Arthur J. Olson (IEEE Visualization, 2004)

A semiempirical free energy force field with charge-based desolvation. - Ruth Huey; Garrett M. Morris; Arthur J. Olson; David S. Goodsell (J. Comput. Chem., 2007)

Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes. - Max W. Chang; Richard K. Belew; Kate S. Carroll; Arthur J. Olson; David S. Goodsell (J. Comput. Chem., 2008)

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. - Garrett M. Morris; Ruth Huey; William Lindstrom; Michel F. Sanner; Richard K. Belew; David S. Goodsell; Arthur J. Olson (J. Comput. Chem., 2009)

The RCSB Protein Data Bank: redesigned web site and web services. - Peter W. Rose; Bojan Beran; Chunxiao Bi; Wolfgang Bluhm; Dimitris Dimitropoulos; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; John D. Westbrook; Jasmine Young; Benjamin T. Yukich; et al. (Nucleic Acids Res., 2011)

Protein Flexibility in Virtual Screening: The BACE-1 Case Study. - Sandro Cosconati; Luciana Marinelli; Francesco Saverio Di Leva; Valeria La Pietra; Angela De Simone; Francesca Mancini; Vincenza Andrisano; Ettore Novellino; David S. Goodsell; Arthur J. Olson (J. Chem. Inf. Model., 2012)

The RCSB Protein Data Bank: new resources for research and education. - Peter W. Rose; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Dimitris Dimitropoulos; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; Alexander G. Ramos; et al. (Nucleic Acids Res., 2013)

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. - Peter W. Rose; Andreas Prlic; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; John D. Westbrook; Jesse Woo; Jasmine Young; Christine Zardecki; et al. (Nucleic Acids Res., 2015)

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility. - Pradeep Anand Ravindranath; Stefano Forli; David S. Goodsell; Arthur J. Olson; Michel F. Sanner (PLoS Comput. Biol., 2015)

Chameleon - Dynamic Color Mapping for Multi-Scale Structural Biology Models. - Nicholas Waldin; Mathieu Le Muzic; Manuela Waldner; M. Eduard Gröller; David S. Goodsell; Ludovic Autin; Ivan Viola (VCBM/MedViz, 2016)

Visibility Equalizer Cutaway Visualization of Mesoscopic Biological Models. - Mathieu Le Muzic; Peter Mindek; Johannes Sorger; Ludovic Autin; David S. Goodsell; Ivan Viola (Comput. Graph. Forum, 2016)

Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives. - Richard K. Belew; Stefano Forli; David S. Goodsell; T. J. O'Donnell; Arthur J. Olson (J. Chem. Inf. Model., 2016)

The RCSB protein data bank: integrative view of protein, gene and 3D structural information. - Peter W. Rose; Andreas Prlic; Ali Altunkaya; Chunxiao Bi; Anthony R. Bradley; Cole H. Christie; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Rachel Kramer Green; David S. Goodsell; et al. (Nucleic Acids Res., 2017)

CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments. - Adam Gardner; Ludovic Autin; Brett Barbaro; Arthur J. Olson; David S. Goodsell (IEEE Computer Graphics and Applications, 2018)

Instant Construction and Visualization of Crowded Biological Environments. - Tobias Klein; Ludovic Autin; Barbora Kozlíková; David S. Goodsell; Arthur J. Olson; M. Eduard Gröller; Ivan Viola (IEEE Trans. Vis. Comput. Graph., 2018)

Parallel Generation and Visualization of Bacterial Genome Structures. - Tobias Klein; Peter Mindek; Ludovic Autin; David S. Goodsell; Arthur J. Olson; M. Eduard Gröller; Ivan Viola (Comput. Graph. Forum, 2019)

Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations. - Nicholas Waldin; Manuela Waldner; Mathieu Le Muzic; M. Eduard Gröller; David S. Goodsell; Ludovic Autin; Arthur J. Olson; Ivan Viola (Comput. Graph. Forum, 2019)

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. - Stephen K. Burley; Helen M. Berman; Charmi Bhikadiya; Chunxiao Bi; Li Chen 022; Luigi Di Costanzo; Cole H. Christie; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Sutapa Ghosh; et al. (Nucleic Acids Res., 2019)

Integrative modeling of the HIV-1 ribonucleoprotein complex. - David S. Goodsell; Andrew Jewett; Arthur J. Olson; Stefano Forli (PLoS Comput. Biol., 2019)

Symmetry at the Cellular Mesoscale. - David S. Goodsell (Symmetry, 2019)

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. - David Kouril; Ladislav Cmolík; Barbora Kozlíková; Hsiang-Yun Wu; Graham Johnson; David S. Goodsell; Arthur J. Olson; M. Eduard Gröller; Ivan Viola (IEEE Trans. Vis. Comput. Graph., 2019)

Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation. - Ludovic Autin; Martina Maritan; Brett A. Barbaro; Adam Gardner; Arthur J. Olson; Michel F. Sanner; David S. Goodsell (MolVa@Eurographics/EuroVis, 2020)

Impact of the Protein Data Bank Across Scientific Disciplines. - Zukang Feng; Natalie Verdiguel; Luigi Di Costanzo; David S. Goodsell; John D. Westbrook; Stephen K. Burley; Christine Zardecki (Data Sci. J., 2020)

CellPAINT: Turnkey Illustration of Molecular Cell Biology. - Adam Gardner; Ludovic Autin; Daniel Fuentes; Martina Maritan; Benjamin A. Barad; Michaela Medina; Arthur J. Olson; Danielle A. Grotjahn; David S. Goodsell (Frontiers Bioinform., 2021)

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. - Stephen K. Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Li Chen 022; Gregg V. Crichlow; Cole H. Christie; Kenneth Dalenberg; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; et al. (Nucleic Acids Res., 2021)

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models. - Ngan V. T. Nguyen; Ondrej Strnad; Tobias Klein; Deng Luo; Ruwayda Alharbi; Peter Wonka; Martina Maritan; Peter Mindek; Ludovic Autin; David S. Goodsell; Ivan Viola (IEEE Trans. Vis. Comput. Graph., 2021)

Integrative illustration of a JCVI-syn3A minimal cell. - David S. Goodsell (J. Integr. Bioinform., 2022)

Changing Aesthetics in Biomolecular Graphics. - Laura A. Garrison; David S. Goodsell; Stefan Bruckner (IEEE Computer Graphics and Applications, 2023)

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. - Stephen K. Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Henry Chao; Li Chen 022; Paul A. Craig; Gregg V. Crichlow; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Maryam Fayazi; et al. (Nucleic Acids Res., 2023)

Folding paper models of biostructures for outreach and education. - David S. Goodsell; Shuchismita Dutta; Brian P. Hudson; Maria Voigt; Stephen K. Burley; Christine Zardecki (Patterns, 2024)