Gene Slider: sequence logo interactive data-visualization for education and research. - Jamie Waese; Asher Pasha; Tingting Wang; Anna van Weringh; David S. Guttman; Nicholas J. Provart (Bioinform., 2016)

A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies. - Shalabh Thakur; David S. Guttman (BMC Bioinform., 2016)

RecPD: A Recombination-aware measure of phylogenetic diversity. - Cedoljub Bundalovic-Torma; Darrell Desveaux; David S. Guttman (PLoS Comput. Biol., 2022)

Predictive modeling of antibiotic eradication therapy success for new-onset Pseudomonas aeruginosa pulmonary infections in children with cystic fibrosis. - Lucía Graña-Miraglia; Nadia Morales-Lizcano; Pauline W. Wang; David M. Hwang; Yvonne C. W. Yau; Valerie J. Waters; David S. Guttman (PLoS Comput. Biol., 2023)