PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). - Amit Bahl; Brian P. Brunk; Ross L. Coppel; Jonathan Crabtree; Sharon J. Diskin; Martin J. Fraunholz; Gregory R. Grant; Dinesh Gupta; Robert L. Huestis; Jessica C. Kissinger; Philip Labo; Li Li; et al. (Nucleic Acids Res., 2002)

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. - Amit Bahl; Brian P. Brunk; Jonathan Crabtree; Martin J. Fraunholz; Bindu Gajria; Gregory R. Grant; Hagai Ginsburg; Dinesh Gupta; Jessica C. Kissinger; Philip Labo; Li Li; Matthew D. Mailman; et al. (Nucleic Acids Res., 2003)

ToxoDB: accessing the Toxoplasma gondii genome. - Jessica C. Kissinger; Bindu Gajria; Li Li; Ian T. Paulsen; David S. Roos (Nucleic Acids Res., 2003)

ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. - Li Li; Jonathan Crabtree; Steve Fischer; Deborah F. Pinney; Christian J. Stoeckert Jr.; L. David Sibley; David S. Roos (Nucleic Acids Res., 2004)

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. - Feng Chen; Aaron J. Mackey; Christian J. Stoeckert Jr.; David S. Roos (Nucleic Acids Res., 2006)

Genomic scale analysis of lateral gene transfer in Apicomplexan parasites: insights into early eukaryotic evolution, host-pathogen interaction and drug target development. - Lucia Peixoto; David S. Roos (BMC Bioinform., 2007)

ApiDB: integrated resources for the apicomplexan bioinformatics resource center. - Cristina Aurrecoechea; Mark Heiges; Haiming Wang; Zhiming Wang; Steve Fischer; Philippa M. Rhodes; John A. Miller 001; Eileen T. Kraemer; Christian J. Stoeckert Jr.; David S. Roos; Jessica C. Kissinger (Nucleic Acids Res., 2007)

Evigan: a hidden variable model for integrating gene evidence for eukaryotic gene prediction. - Qian Liu; Aaron J. Mackey; David S. Roos; Fernando C. N. Pereira (Bioinform., 2008)

Reranking candidate gene models with cross-species comparison for improved gene prediction. - Qian Liu; Koby Crammer; Fernando C. N. Pereira; David S. Roos (BMC Bioinform., 2008)

ToxoDB: an integrated Toxoplasma gondii database resource. - Bindu Gajria; Amit Bahl; John Brestelli; Jennifer Dommer; Steve Fischer; Xin Gao 002; Mark Heiges; John Iodice; Jessica C. Kissinger; Aaron J. Mackey; Deborah F. Pinney; David S. Roos; et al. (Nucleic Acids Res., 2008)

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. - Cristina Aurrecoechea; John Brestelli; Brian P. Brunk; Jane M. Carlton; Jennifer Dommer; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; et al. (Nucleic Acids Res., 2009)

PlasmoDB: a functional genomic database for malaria parasites. - Cristina Aurrecoechea; John Brestelli; Brian P. Brunk; Jennifer Dommer; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; Frank Innamorato; et al. (Nucleic Acids Res., 2009)

Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens. - María P. Magariños; John P. Overington; Santiago J. Carmona; Dhanasekaran Shanmugam; Maria A. Doyle; Stuart A. Ralph; Gregory J. Crowther; Christiane Hertz-Fowler; Solomon Nwaka; Matthew Berriman; David S. Roos; Wesley C. Van Voorhis; et al. (BMC Bioinform., 2010)

TriTrypDB: a functional genomic resource for the Trypanosomatidae. - Martin Aslett; Cristina Aurrecoechea; Matthew Berriman; John Brestelli; Brian P. Brunk; Mark Carrington; Daniel P. Depledge; Steve Fischer; Bindu Gajria; Xin Gao 002; Malcolm J. Gardner; Alan R. Gingle; et al. (Nucleic Acids Res., 2010)

EuPathDB: a portal to eukaryotic pathogen databases. - Cristina Aurrecoechea; John Brestelli; Brian P. Brunk; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; Frank Innamorato; John Iodice; et al. (Nucleic Acids Res., 2010)

The strategies WDK: a graphical search interface and web development kit for functional genomics databases. - Steve Fischer; Cristina Aurrecoechea; Brian P. Brunk; Xin Gao 002; Omar S. Harb; Eileen T. Kraemer; Cary Pennington; Charles Treatman; Jessica C. Kissinger; David S. Roos; Christian J. Stoeckert Jr. (Database J. Biol. Databases Curation, 2011)

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species. - Cristina Aurrecoechea; Ana Barreto; John Brestelli; Brian P. Brunk; Elisabet V. Caler; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; et al. (Nucleic Acids Res., 2011)

Toward community standards in the quest for orthologs. - Christophe Dessimoz; Toni Gabaldón; David S. Roos; Erik L. L. Sonnhammer; Javier Herrero (Bioinform., 2012)

GeneDB - an annotation database for pathogens. - Flora J. Logan-Klumpler; Nishadi De Silva; Ulrike Böhme; Matthew B. Rogers; Giles Velarde; Jacqueline A. McQuillan; Tim Carver; Martin Aslett; Christian Olsen; Sandhya Subramanian; Isabelle Phan; Carol Farris; et al. (Nucleic Acids Res., 2012)

TDR Targets: a chemogenomics resource for neglected diseases. - María P. Magariños; Santiago J. Carmona; Gregory J. Crowther; Stuart A. Ralph; David S. Roos; Dhanasekaran Shanmugam; Wesley C. Van Voorhis; Fernán Agüero (Nucleic Acids Res., 2012)

FungiDB: an integrated functional genomics database for fungi. - Jason E. Stajich; Todd W. Harris; Brian P. Brunk; John Brestelli; Steve Fischer; Omar S. Harb; Jessica C. Kissinger; Wei Li 031; Vishal Nayak; Deborah F. Pinney; Christian J. Stoeckert Jr.; David S. Roos (Nucleic Acids Res., 2012)

EuPathDB: The Eukaryotic Pathogen database. - Cristina Aurrecoechea; Ana Barreto; John Brestelli; Brian P. Brunk; Shon Cade; Ryan Doherty; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; et al. (Nucleic Acids Res., 2013)

SchistoDB: an updated genome resource for the three key schistosomes of humans. - Adhemar Zerlotini; Eric R. G. R. Aguiar; Fudong Yu; Huayong Xu; Yixue Li; Neil D. Young; Robin B. Gasser; Anna V. Protasio; Matthew Berriman; David S. Roos; Jessica C. Kissinger; Guilherme C. Oliveira (Nucleic Acids Res., 2013)

Malaria Study Data Integration and Information Retrieval Based on OBO Foundry Ontologies. - Jie Zheng 001; Jashon Cade; Brian P. Brunk; David S. Roos; Christian J. Stoeckert Jr.; San James; Emmanuel Arinaitwe; Bryan Greenhouse; Grant Dorsey; Steven Sullivan; Jane M. Carlton; Gabriel Carrasco-Escobar; et al. (ICBO/BioCreative, 2016)

EuPathDB: the eukaryotic pathogen genomics database resource. - Cristina Aurrecoechea; Ana Barreto; Evelina Y. Basenko; John Brestelli; Brian P. Brunk; Shon Cade; Kathryn Crouch; Ryan Doherty; Dave Falke; Steve Fischer; Bindu Gajria; Omar S. Harb; et al. (Nucleic Acids Res., 2017)

MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments. - Francislon S. Oliveira; John Brestelli; Shon Cade; Jie Zheng 001; John Iodice; Steve Fischer; Cristina Aurrecoechea; Jessica C. Kissinger; Brian P. Brunk; Christian J. Stoeckert Jr.; Gabriel R. Fernandes; David S. Roos; et al. (Nucleic Acids Res., 2018)

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. - Beatrice Amos; Cristina Aurrecoechea; Matthieu Barba; Ana Barreto; Evelina Y. Basenko; Wojciech Bazant; Robert Belnap; Ann S. Blevins; Ulrike Böhme; John Brestelli; Brian P. Brunk; Mark J. Caddick; et al. (Nucleic Acids Res., 2022)

The Quest for Orthologs orthology benchmark service in 2022. - Yannis Nevers; Tamsin E. M. Jones; Dushyanth Jyothi; Bethan Yates; Meritxell Ferret; Laura Portell-Silva; Laia Codó; Salvatore Cosentino; Marina Marcet-Houben; Anna Vlasova; Laetitia Poidevin; Arnaud Kress; et al. (Nucleic Acids Res., 2022)