Simulation of Word-Meaning Stochastic Processes. - David Sankoff (COLING, 1969)

Dictionary Structure and Probability Measures - David Sankoff (Inf. Control., 1971)

Shortcuts, diversions, and maximal chainsin partially ordered sets. - David Sankoff; Peter H. Sellers (Discret. Math., 1973)

Locating the vertices of a steiner tree in an arbitrary metric space. - David Sankoff; Pascale Rousseau (Math. Program., 1975)

A strategy for sequence phylogeny research. - David Sankoff; R. J. Cedergren; W. McKay (Nucleic Acids Res., 1982)

Comparison of musical sequences. - Marcel Mongeau; David Sankoff (Comput. Humanit., 1990)

Edit Distances for Genome Comparisons Based on Non-Local Operations. - David Sankoff (CPM, 1992)

Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes. - John D. Kececioglu; David Sankoff (CPM, 1993)

Efficient Bounds for Oriented Chromosome Inversion Distance. - John D. Kececioglu; David Sankoff (CPM, 1994)

Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic Invariants. - Vincent Ferretti; B. Franz Lang; David Sankoff (J. Comput. Biol., 1994)

Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement. - John D. Kececioglu; David Sankoff (Algorithmica, 1995)

Original Synteny. - Vincent Ferretti; Joseph H. Nadeau; David Sankoff (CPM, 1996)

Conserved Synteny As a Measure of Genomic Distance. - David Sankoff; Joseph H. Nadeau (Discret. Appl. Math., 1996)

Steiner Points in the Space of Genome Rearrangements. - David Sankoff; Gopal Sundaram; John D. Kececioglu (Int. J. Found. Comput. Sci., 1996)

The Median Problem for Breakpoints in Comparative Genomics. - David Sankoff; Mathieu Blanchette (COCOON, 1997)

On the Nadeau-Taylor Theory of Conserved Chromosome Segments. - David Sankoff; Marie-Noelle Parent; Isabelle Marchand; Vincent Ferretti (CPM, 1997)

Conserved Segment Identification. - David Sankoff; Vincent Ferretti; Joseph H. Nadeau (J. Comput. Biol., 1997)

The Production of Code-Mixed Discourse. - David Sankoff (COLING-ACL, 1998)

Genome Halving. - Nadia El-Mabrouk; Joseph H. Nadeau; David Sankoff (CPM, 1998)

Multiple genome rearrangements. - David Sankoff; Mathieu Blanchette (RECOMB, 1998)

Multiple Genome Rearrangement and Breakpoint Phylogeny. - David Sankoff; Mathieu Blanchette (J. Comput. Biol., 1998)

Hybridization and Genome Rearrangement. - Nadia El-Mabrouk; David Sankoff (CPM, 1999)

Reconstructing the pre-doubling genome. - Nadia El-Mabrouk; David Bryant; David Sankoff (RECOMB, 1999)

Probability models for genome rearrangement and linear invariants for phylogenetic inference. - David Sankoff; Mathieu Blanchette (RECOMB, 1999)

Generating 3D Virtual Populations from Pictures of a Few Individuals. - Won-Sook Lee; Pierre Beylot; David Sankoff; Nadia Magnenat-Thalmann (WADS, 1999)

Genome rearrangement with gene families. - David Sankoff (Bioinform., 1999)

Phylogenetic Reconstruction from Genome Order Data. - David Bryant; David Sankoff (Electron. Notes Discret. Math., 1999)

Phylogenetic Invariants for Genome Rearrangements. - David Sankoff; Mathieu Blanchette (J. Comput. Biol., 1999)

The early introduction of dynamic programming into computational biology. - David Sankoff (Bioinform., 2000)

Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints. - David Sankoff; David Bryant; Mélanie Deneault; B. Franz Lang; Gertraud Burger (J. Comput. Biol., 2000)

Short inversions and conserved gene clusters. - David Sankoff (SAC, 2002)

Short inversions and conserved gene cluster. - David Sankoff (Bioinform., 2002)

Detection and validation of single gene inversions. - Jean-François Lefebvre; Nadia El-Mabrouk; Elisabeth R. M. Tillier; David Sankoff (ISMB (Supplement of Bioinformatics), 2003)

Tests for Gene Clustering. - Dannie Durand; David Sankoff (J. Comput. Biol., 2003)

The Reconstruction of Doubled Genomes. - Nadia El-Mabrouk; David Sankoff (SIAM J. Comput., 2003)

Genomic features in the breakpoint regions between syntenic blocks. - Phil Trinh; Aoife McLysaght; David Sankoff (ISMB/ECCB (Supplement of Bioinformatics), 2004)

The Statistical Significance of Max-Gap Clusters. - Rose Hoberman; David Sankoff; Dannie Durand (Comparative Genomics, 2004)

The Distribution of Inversion Lengths in Bacteria. - David Sankoff; Jean-François Lefebvre; Elisabeth R. M. Tillier; Adrian Maler; Nadia El-Mabrouk (Comparative Genomics, 2004)

Estimators of Translocations and Inversions in Comparative Maps. - David Sankoff; Matthew Mazowita (Comparative Genomics, 2004)

Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. - David Sankoff; Phil Trinh (RECOMB, 2004)

Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues. - Guillaume Bourque; David Sankoff (J. Bioinform. Comput. Biol., 2004)

Editorial: Combinatiorial Pattern Matching. - Raffaele Giancarlo; David Sankoff (J. Discrete Algorithms, 2004)

Reversal distance for partially ordered genomes. - Chunfang Zheng; Aleksander Lenert; David Sankoff (ISMB (Supplement of Bioinformatics), 2005)

Power Boosts for Cluster Tests. - David Sankoff; Lani Haque (Comparative Genomics, 2005)

Stability of Rearrangement Measures in the Comparison of Genome Sequences. - David Sankoff; Matthew Mazowita (RECOMB, 2005)

Reversals of Fortune. - David Sankoff; Chunfang Zheng; Aleksander Lenert (Comparative Genomics, 2005)

The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion. - Rose Hoberman; David Sankoff; Dannie Durand (J. Comput. Biol., 2005)

Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement. - David Sankoff; Phil Trinh (J. Comput. Biol., 2005)

Rearrangement of Noisy Genomes. - Chunfang Zheng; David Sankoff (International Conference on Computational Science (2), 2006)

Statistical Evaluation of Genome Rearrangement. - David Sankoff (RECOMB, 2006)

Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes. - Andrew Wei Xu; Chunfang Zheng; David Sankoff (Comparative Genomics, 2006)

Stability of Rearrangement Measures in the Comparison of Genome Sequences. - Matthew Mazowita; Lani Haque; David Sankoff (J. Comput. Biol., 2006)

The Distribution of Genomic Distance between Random Genomes. - David Sankoff; Lani Haque (J. Comput. Biol., 2006)

Genome rearrangements with partially ordered chromosomes. - Chunfang Zheng; David Sankoff (J. Comb. Optim., 2006)

The Signal in the Genomes. - David Sankoff (PLoS Comput. Biol., 2006)

Conserved segment statistics and rearrangement inferences in comparative genomics. - David Sankoff (Mathematics of Evolution and Phylogeny, 2007)

Preface. - David Sankoff; Lusheng Wang; Francis Y. L. Chin (APBC, 2007)

Polyploids, genome halving and phylogeny. - David Sankoff; Chunfang Zheng; Qian Zhu 002 (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Parts of the Problem of Polyploids in Rearrangement Phylogeny. - Chunfang Zheng; Qian Zhu 002; David Sankoff (RECOMB-CG, 2007)

Algorithms for the Extraction of Synteny Blocks from Comparative Maps. - Vicky Choi; Chunfang Zheng; Qian Zhu 002; David Sankoff (WABI, 2007)

Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. - Zaky Adam; Monique Turmel; Claude Lemieux; David Sankoff (J. Comput. Biol., 2007)

Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes. - Wei Xu; Chunfang Zheng; David Sankoff (J. Comput. Biol., 2007)

Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis. - Chunfang Zheng; Qian Zhu 002; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases. - Andrew Wei Xu; Benoît Alain; David Sankoff (ECCB, 2008)

Hierarchical Clustering Using Constraints. - Mariana Kant; Maurice LeBon; David Sankoff (ISBRA, 2008)

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. - Chunfang Zheng; Qian Zhu 002; Zaky Adam; David Sankoff (ISMB, 2008)

Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny. - David Sankoff; Chunfang Zheng; P. Kerr Wall; Claude W. dePamphilis; James H. Leebens-Mack; Victor A. Albert (RECOMB-CG, 2008)

Multichromosomal Genome Median and Halving Problems. - Eric Tannier; Chunfang Zheng; David Sankoff (WABI, 2008)

Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem. - Andrew Wei Xu; David Sankoff (WABI, 2008)

A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells. - Shenggang Li; Miguel A. Andrade-Navarro; David Sankoff (BSB, 2008)

Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion. - Ximing Xu 002; David Sankoff (BSB, 2008)

Descendants of Whole Genome Duplication within Gene Order Phylogeny. - Chunfang Zheng; Qian Zhu 002; David Sankoff (J. Comput. Biol., 2008)

Session Introduction. - Bernard M. E. Moret; Webb Miller; Pavel A. Pevzner; David Sankoff (Pacific Symposium on Biocomputing, 2009)

Multichromosomal median and halving problems under different genomic distances. - Eric Tannier; Chunfang Zheng; David Sankoff (BMC Bioinform., 2009)

Genome aliquoting with double cut and join. - Robert Warren; David Sankoff (BMC Bioinform., 2009)

Genome Halving with Double Cut and Join. - Robert Warren; David Sankoff (J. Bioinform. Comput. Biol., 2009)

Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome. - Chunfang Zheng; P. Kerr Wall; James H. Leebens-Mack; Claude de Pamphilis; Victor A. Albert; David Sankoff (J. Bioinform. Comput. Biol., 2009)

Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm Phylogeny. - David Sankoff; Chunfang Zheng; P. Kerr Wall; Claude de Pamphilis; James H. Leebens-Mack; Victor A. Albert (J. Comput. Biol., 2009)

Issues in the Reconstruction of Gene Order Evolution. - David Sankoff; Chunfang Zheng; Adriana Muñoz; Zhenyu Yang; Zaky Adam; Robert Warren; Vicky Choi; Qian Zhu 002 (J. Comput. Sci. Technol., 2009)

Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution. - Qian Zhu 002; Zaky Adam; Vicky Choi; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Scaffold Filling under the Breakpoint Distance. - Haitao Jiang; Chunfang Zheng; David Sankoff; Binhai Zhu (RECOMB-CG, 2010)

Scaffold filling, contig fusion and comparative gene order inference. - Adriana Muñoz; Chunfang Zheng; Qian Zhu 002; Victor A. Albert; Steve Rounsley; David Sankoff (BMC Bioinform., 2010)

A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. - Zaky Adam; David Sankoff (J. Comput. Biol., 2010)

Natural Parameter Values for Generalized Gene Adjacency. - Zhenyu Yang; David Sankoff (J. Comput. Biol., 2010)

Rearrangement Phylogeny of Genomes in Contig Form. - Adriana Muñoz; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Changes in gene expression near evolutionary breakpoints. - Adriana Muñoz; David Sankoff (BCB, 2011)

Generalized Adjacency in Genetic Networks and the Conservation of Functional Gene Clusters. - Zhenyu Yang; David Sankoff (BIBM, 2011)

OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk). - David Sankoff (ISBRA, 2011)

OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations. - Chunfang Zheng; Krister M. Swenson; Eric Lyons 002; David Sankoff (WABI, 2011)

Listing all sorting reversals in quadratic time. - Krister M. Swenson; Ghada Badr; David Sankoff (Algorithms Mol. Biol., 2011)

Fractionation statistics. - Baoyong Wang; Chunfang Zheng; David Sankoff (BMC Bioinform., 2011)

On the PATHGROUPS approach to rapid small phylogeny. - Chunfang Zheng; David Sankoff (BMC Bioinform., 2011)

Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives. - Ghada Badr; Krister M. Swenson; David Sankoff (J. Comput. Biol., 2011)

Genome Aliquoting Revisited. - Robert Warren; David Sankoff (J. Comput. Biol., 2011)

Keynote: Aspects of fractionation. - David Sankoff (ICCABS, 2012)

Ancient angiosperm hexaploidy meets ancestral eudicot gene order. - Chunfang Zheng; Victor A. Albert; Eric Lyons 002; David Sankoff (ICCABS, 2012)

Fractionation, rearrangement and subgenome dominance. - David Sankoff; Chunfang Zheng (Bioinform., 2012)

Medians seek the corners, and other conjectures. - Maryam Haghighi; David Sankoff (BMC Bioinform., 2012)

A consolidation algorithm for genomes fractionated after higher order polyploidization. - Katharina Jahn 001; Chunfang Zheng; Jakub Kovác; David Sankoff (BMC Bioinform., 2012)

Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution. - Adriana Muñoz; David Sankoff (BMC Bioinform., 2012)

Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals. - Zhenyu Yang; David Sankoff (BMC Bioinform., 2012)

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes. - Chunfang Zheng; David Sankoff (BMC Bioinform., 2012)

A model for biased fractionation after whole genome duplication. - David Sankoff; Chunfang Zheng; Baoyong Wang (BMC Genom., 2012)

Gene clusters as intersections of powers of paths. - Vítor Costa 002; Simone Dantas; David Sankoff; Ximing Xu 002 (J. Braz. Comput. Soc., 2012)

Scaffold Filling under the Breakpoint and Related Distances. - Haitao Jiang; Chunfang Zheng; David Sankoff; Binhai Zhu (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

The Kernel of Maximum Agreement Subtrees. - Krister M. Swenson; Eric C. H. Chen; Nicholas D. Pattengale; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Fractionation, Rearrangement, Consolidation, Reconstruction. - David Sankoff; Chunfang Zheng (Models and Algorithms for Genome Evolution, 2013)

The dynamics of functional classes of plant genes in rediploidized ancient polyploids. - Eric C. H. Chen; Carlos Fernando Buen Abad Najar; Chunfang Zheng; Alex Brandts; Eric Lyons 002; Haibao Tang; Lorenzo Carretero-Paulet; Victor A. Albert; David Sankoff (BMC Bioinform., 2013)

Phase change for the accuracy of the median value in estimating divergence time. - Arash Jamshidpey; David Sankoff (BMC Bioinform., 2013)

Practical aliquoting of flowering plant genomes. - Chunfang Zheng; David Sankoff (BMC Bioinform., 2013)

Practical halving; the Nelumbo nucifera evidence on early eudicot evolution. - Chunfang Zheng; David Sankoff (Comput. Biol. Chem., 2014)

Statistical analysis of fractionation resistance by functional category and expression level. - Eric C. H. Chen; Annie Morin; Jean-Hugues Chauchat; David Sankoff (ICCABS, 2015)

Literature Visualization and Similarity Measurement Based on Citation Relations. - Hanadi Alfraidi; Won-Sook Lee; David Sankoff (IV, 2015)

Graph-Theoretic Modelling of the Domain Chaining Problem. - Poly H. da Silva; Simone Dantas; Chunfang Zheng; David Sankoff (WABI, 2015)

Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling. - David Sankoff; Chunfang Zheng; Baoyong Wang; Carlos Fernando Buen Abad Najar (BMC Bioinform., 2015)

The Trees in the Peaks. - David Sankoff; Chunfang Zheng; Eric Lyons 002; Haibao Tang (AlCoB, 2016)

Compromise or optimize? The breakpoint anti-median. - Caroline Anne Larlee; Alex Brandts; David Sankoff (BMC Bioinform., 2016)

A continuous analog of run length distributions reflecting accumulated fractionation events. - Zhe Yu; David Sankoff (BMC Bioinform., 2016)

Locating rearrangement events in a phylogeny based on highly fragmented assemblies. - Chunfang Zheng; David Sankoff (BMC Genom., 2016)

The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploidization and Fractionation. - Yue Zhang; David Sankoff (RECOMB-CG, 2017)

Asymptotic medians of random permutations sampled from reversal random walks. - Arash Jamshidpey; David Sankoff (Theor. Comput. Sci., 2017)

A Randomized FPT Approximation Algorithm for Maximum Alternating-Cycle Decomposition with Applications. - Haitao Jiang; Lianrong Pu; Letu Qingge; David Sankoff; Binhai Zhu (COCOON, 2018)

Speciation and Rate Variation in a Birth-and-Death Account of WGD and Fractionation; the Case of Solanaceae. - Yue Zhang; Chunfang Zheng; David Sankoff (RECOMB-CG, 2018)

Accurate prediction of orthologs in the presence of divergence after duplication. - Manuel Lafond; Mona Meghdari Miardan; David Sankoff (Bioinform., 2018)

Resolution effects in reconstructing ancestral genomes. - Chunfang Zheng; Yuji Jeong; Madisyn Gabrielle Turcotte; David Sankoff (BMC Genom., 2018)

Evolutionary Model for the Statistical Divergence of Paralogous and Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation. - Yue Zhang; Chunfang Zheng; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

A branching process for homology distribution-based inference of polyploidy, speciation and loss. - Yue Zhang; Chunfang Zheng; David Sankoff (Algorithms Mol. Biol., 2019)

Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment. - Yue Zhang; Chunfang Zheng; David Sankoff (BMC Bioinform., 2019)

Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics. - David Sankoff; Chunfang Zheng; Yue Zhang; Joao Meidanis; Eric Lyons 002; Haibao Tang (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Gaps and Runs in Syntenic Alignments. - Zhe Yu; Chunfang Zheng; David Sankoff (AlCoB, 2020)

RACCROCHE: Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences. - Qiaoji Xu; Lingling Jin; Chunfang Zheng; James H. Leebens-Mack; David Sankoff (ICCABS, 2020)

Validation of Automated Chromosome Recovery in the Reconstruction of Ancestral Gene Order. - Qiaoji Xu; Lingling Jin; James H. Leebens-Mack; David Sankoff (Algorithms, 2021)

The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny. - Qiaoji Xu; Xiaomeng Zhang; Yue Zhang; Chunfang Zheng; James H. Leebens-Mack; Lingling Jin; David Sankoff (J. Bioinform. Comput. Biol., 2021)

Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences. - Qiaoji Xu; Lingling Jin; Yue Zhang; Xiaomeng Zhang; Chunfang Zheng; James H. Leebens-Mack; David Sankoff (J. Comput. Biol., 2021)

Guest Editorial for the 17th Asia Pacific Bioinformatics Conference. - Louxin Zhang; Shaoliang Peng; Yi-Ping Phoebe Chen; David Sankoff; Guoliang Li 002; Hong-Yu Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Branching Out to Speciation in a Model of Fractionation: The Malvaceae. - Yue Zhang; Chunfang Zheng; Sindeed Islam; Yong-Min Kim; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Syntenic Dimensions of Genomic Evolution. - Zhe Yu; David Sankoff (RECOMB-CG, 2022)

Gene Order Phylogeny via Ancestral Genome Reconstruction Under Dollo. - Qiaoji Xu; David Sankoff (RECOMB-CG, 2023)

Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. - Mona Meghdari Miardan; Arash Jamshidpey; David Sankoff (J. Comput. Biol., 2023)

Capacity, Collision Avoidance and Shopping Rate under a Social Distancing Regime. - Haitian Zhong; David Sankoff (Entropy, 2023)

Sampling Gene Adjacencies and Geodesic Points of Random Genomes. - Poly H. da Silva; Arash Jamshidpey; David Sankoff (RECOMB-CG, 2024)

Residual Immunity and Seasonality of an Epidemic. - Siyu Chen; David Sankoff (RECOMB-CG, 2025)

Ancestral Pangenomes and Their Phylogenetic Reconstruction. - Xintong Zhou; David Sankoff (RECOMB-CG, 2025)

Identifying Breakpoint Median Genomes: A Branching Algorithm Approach. - Poly H. da Silva; Arash Jamshidpey; David Sankoff (WABI, 2025)