From Cells to Islands: An Unified Model of Cellular Parallel Genetic Algorithms. - David Simoncini; Philippe Collard; Sébastien Vérel; Manuel Clergue (ACRI, 2006)

Anisotropic selection in cellular genetic algorithms. - David Simoncini; Sébastien Vérel; Philippe Collard; Manuel Clergue (GECCO, 2006)

On the influence of selection operators on performances in cellular Genetic Algorithms. - David Simoncini; Philippe Collard; Sébastien Vérel; Manuel Clergue (IEEE Congress on Evolutionary Computation, 2007)

Centric selection: a way to tune the exploration/exploitation trade-off. - David Simoncini; Sébastien Vérel; Philippe Collard; Manuel Clergue (GECCO, 2009)

Durandal: Fast exact clustering of protein decoys. - Francois Berenger; Rojan Shrestha; Yong Zhou; David Simoncini; Kam Y. J. Zhang (J. Comput. Chem., 2012)

Approximate Counting with Deterministic Guarantees for Affinity Computation. - Clément Viricel; David Simoncini; David Allouche; Simon de Givry; Sophie Barbe; Thomas Schiex (MCO (2), 2015)

Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. - Clément Viricel; David Simoncini; Sophie Barbe; Thomas Schiex (CP, 2016)

Fragger: a protein fragment picker for structural queries. - Francois Berenger; David Simoncini; Arnout R. D. Voet; Rojan Shrestha; Kam Y. J. Zhang (F1000Research, 2017)

Fitness landscape analysis around the optimum in computational protein design. - David Simoncini; Sophie Barbe; Thomas Schiex; Sébastien Vérel (GECCO, 2018)

A structural homology approach for computational protein design with flexible backbone. - David Simoncini; Kam Y. J. Zhang; Thomas Schiex; Sophie Barbe (Bioinform., 2019)

Population-Based Sampling and Fragment-Based De Novo Protein Structure Prediction. - David Simoncini; Kam Y. J. Zhang (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Positive multistate protein design. - Jelena Vucinic; David Simoncini; Manon Ruffini; Sophie Barbe; Thomas Schiex (Bioinform., 2020)