Complexity of Compact Proofreading for Self-assembled Patterns. - David Soloveichik; Erik Winfree (DNA, 2005)

The computational power of Benenson automata. - David Soloveichik; Erik Winfree (Theor. Comput. Sci., 2005)

Complexity of Self-Assembled Shapes. - David Soloveichik; Erik Winfree (SIAM J. Comput., 2007)

DNA as a Universal Substrate for Chemical Kinetics. - David Soloveichik; Georg Seelig; Erik Winfree (DNA, 2008)

Statistical Learning of Arbitrary Computable Classifiers - David Soloveichik (CoRR, 2008)

Combining self-healing and proofreading in self-assembly. - David Soloveichik; Matthew Cook 001; Erik Winfree (Nat. Comput., 2008)

Computation with finite stochastic chemical reaction networks. - David Soloveichik; Matthew Cook 001; Erik Winfree; Jehoshua Bruck (Nat. Comput., 2008)

Programmability of Chemical Reaction Networks. - Matthew Cook 001; David Soloveichik; Erik Winfree; Jehoshua Bruck (Algorithmic Bioprocesses, 2009)

Time-Complexity of Multilayered DNA Strand Displacement Circuits. - Georg Seelig; David Soloveichik (DNA, 2009)

Robust Stochastic Chemical Reaction Networks and Bounded Tau-Leaping. - David Soloveichik (J. Comput. Biol., 2009)

Efficient Turing-Universal Computation with DNA Polymers. - Lulu Qian; David Soloveichik; Erik Winfree (DNA, 2010)

Parallelism, Program Size, Time, and Temperature in Self-Assembly. - Ho-Lin Chen; David Doty; Shinnosuke Seki 001; David Soloveichik (Electron. Colloquium Comput. Complex., 2010)

Erratum to "The computational power of Benenson automata" [Theoret. Comput. Sci. 344 (2005) 279-297] - David Soloveichik; Erik Winfree (Theor. Comput. Sci., 2011)

NINJA: boolean modelling and formal verification of tiered-rate chemical reaction networks (extended abstract). - Aadithya V. Karthik; David Soloveichik; Sayak Ray; Baruch Sterin; Alan Mishchenko; Robert K. Brayton; Jaijeet Roychowdhury (BCB, 2014)

Rate-independent computation in continuous chemical reaction networks. - Ho-Lin Chen; David Doty; David Soloveichik (ITCS, 2014)

Deterministic function computation with chemical reaction networks. - Ho-Lin Chen; David Doty; David Soloveichik (Nat. Comput., 2014)

Leakless DNA Strand Displacement Systems. - Chris Thachuk; Erik Winfree; David Soloveichik (DNA, 2015)

Preface. - David Soloveichik; Bernard Yurke (Nat. Comput., 2015)

Robustness of Expressivity in Chemical Reaction Networks. - Robert Brijder; David Doty; David Soloveichik (DNA, 2016)

Probability 1 computation with chemical reaction networks. - Rachel Cummings; David Doty; David Soloveichik (Nat. Comput., 2016)

Robust Detection in Leak-Prone Population Protocols. - Dan Alistarh; Bartlomiej Dudek 001; Adrian Kosowski; David Soloveichik; Przemyslaw Uznanski (DNA, 2017)

Thermodynamic Binding Networks. - David Doty; Trent A. Rogers; David Soloveichik; Chris Thachuk; Damien Woods (DNA, 2017)

The Design Space of Strand Displacement Cascades with Toehold-Size Clamps. - Boya Wang; Chris Thachuk; Andrew D. Ellington; David Soloveichik (DNA, 2017)

Hardness of Computing and Approximating Predicates and Functions with Leaderless Population Protocols. - Amanda Belleville; David Doty; David Soloveichik (ICALP, 2017)

Computing properties of stable configurations of thermodynamic binding networks. - Keenan Breik; Lakshmi Prakash; Chris Thachuk; Marijn Heule; David Soloveichik (CoRR, 2017)

Speed faults in computation by chemical reaction networks. - Ho-Lin Chen; Rachel Cummings; David Doty; David Soloveichik (Distributed Comput., 2017)

: Molecular Programming Language. - Marko Vasic; David Soloveichik; Sarfraz Khurshid (DNA, 2018)

Stable leader election in population protocols requires linear time. - David Doty; David Soloveichik (Distributed Comput., 2018)

Democratic, existential, and consensus-based output conventions in stable computation by chemical reaction networks. - Robert Brijder; David Doty; David Soloveichik (Nat. Comput., 2018)

SIMD||DNA: Single Instruction, Multiple Data Computation with DNA Strand Displacement Cascades. - Boya Wang; Cameron T. Chalk; David Soloveichik (DNA, 2019)

CRNs Exposed: Systematic Exploration of Chemical Reaction Networks. - Marko Vasic; David Soloveichik; Sarfraz Khurshid (CoRR, 2019)

Computing properties of stable configurations of thermodynamic binding networks. - Keenan Breik; Chris Thachuk; Marijn Heule; David Soloveichik (Theor. Comput. Sci., 2019)

CRNs Exposed: A Method for the Systematic Exploration of Chemical Reaction Networks. - Marko Vasic; David Soloveichik; Sarfraz Khurshid (DNA, 2020)

Deep Molecular Programming: A Natural Implementation of Binary-Weight ReLU Neural Networks. - Marko Vasic; Cameron T. Chalk; Sarfraz Khurshid; David Soloveichik (ICML, 2020)

CRN++: Molecular programming language. - Marko Vasic; David Soloveichik; Sarfraz Khurshid (Nat. Comput., 2020)

Molecular Machines from Topological Linkages. - Keenan Breik; Austin Luchsinger; David Soloveichik (DNA, 2021)

Programming and Training Rate-Independent Chemical Reaction Networks. - Marko Vasic; Cameron T. Chalk; Austin Luchsinger; Sarfraz Khurshid; David Soloveichik (CoRR, 2021)

The Spooky Pebble Game. - Niels Kornerup; Jonathan Sadun; David Soloveichik (CoRR, 2021)

Programming Substrate-Independent Kinetic Barriers With Thermodynamic Binding Networks. - Keenan Breik; Cameron T. Chalk; David Doty; David Haley; David Soloveichik (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Composable Rate-Independent Computation in Continuous Chemical Reaction Networks. - Cameron T. Chalk; Niels Kornerup; Wyatt Reeves; David Soloveichik (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Optimal Information Encoding in Chemical Reaction Networks. - Austin Luchsinger; David Doty; David Soloveichik (DNA, 2023)

Thermodynamically Driven Signal Amplification. - Joshua Petrack; David Soloveichik; David Doty (DNA, 2023)

Harvesting Brownian Motion: Zero Energy Computational Sampling. - David Doty; Niels Kornerup; Austin Luchsinger; Leo Orshansky; David Soloveichik; Damien Woods (CoRR, 2023)

Rate-independent Computation in Continuous Chemical Reaction Networks. - Ho-Lin Chen; David Doty; Wyatt Reeves; David Soloveichik (J. ACM, 2023)

Brief Announcement: Optimally Encoding Information in Chemical Reaction Networks. - Austin Luchsinger; David Doty; David Soloveichik (PODC, 2024)

Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems. - Hamidreza Akef; Minki Hhan; David Soloveichik (DNA, 2025)

Tight Bounds on the Spooky Pebble Game: Recycling Qubits with Measurements. - Niels Kornerup; Jonathan Sadun; David Soloveichik (Quantum, 2025)