The estimation of relative site variability among aligned homologous protein sequences. - David Stephen Horner; Graziano Pesole (Bioinform., 2003)

WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments. - Flavio Mignone; David Stephen Horner; Graziano Pesole (Bioinform., 2004)

Correlated substitution analysis and the prediction of amino acid structural contacts. - David Stephen Horner; Walter Pirovano; Graziano Pesole (Briefings Bioinform., 2008)

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements. - Teresa Maria Creanza; David Stephen Horner; Annarita D'Addabbo; Rosalia Maglietta; Flavio Mignone; Nicola Ancona; Graziano Pesole (BMC Bioinform., 2009)

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics. - Matteo Re; Graziano Pesole; David Stephen Horner (BMC Bioinform., 2009)

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. - David Stephen Horner; Giulio Pavesi; Tiziana Castrignanò; Paolo D'Onorio De Meo; Sabino Liuni; Michael Sammeth; Ernesto Picardi; Graziano Pesole (Briefings Bioinform., 2010)

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. - Giorgio Grillo; Antonio Turi; Flavio Licciulli; Flavio Mignone; Sabino Liuni; Sandro Banfi; Vincenzo Alessandro Gennarino; David Stephen Horner; Giulio Pavesi; Ernesto Picardi; Graziano Pesole (Nucleic Acids Res., 2010)

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data. - Matteo Chiara; Federico Zambelli; Ernesto Picardi; David Stephen Horner; Graziano Pesole (Briefings Bioinform., 2020)

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. - Matteo Chiara; Anna Maria D'Erchia; Carmela Gissi; Caterina Manzari; Antonio Parisi; Nicoletta Resta; Federico Zambelli; Ernesto Picardi; Giulio Pavesi; David Stephen Horner; Graziano Pesole (Briefings Bioinform., 2021)

VINYL: Variant prIoritizatioN bY survivaL analysis. - Matteo Chiara; Pietro Mandreoli; Marco Antonio Tangaro; Anna Maria D'Erchia; Sandro Sorrentino; Cinzia Forleo; David Stephen Horner; Federico Zambelli; Graziano Pesole (Bioinform., 2021)

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes. - Matteo Chiara; Federico Zambelli; Marco Antonio Tangaro; Pietro Mandreoli; David Stephen Horner; Graziano Pesole (Bioinform., 2021)