Spherical Object Reconstruction Using Star-Shaped Simplex Meshes. - Pavel Matula; David Svoboda (EMMCVPR, 2001)

Pronominal anaphora resolution in KANTOO English-to-Spanish machine translation system. - Teruko Mitamura; Eric Nyberg; Enrique Torrejón; David Svoboda; Kathryn L. Baker (MTSummit, 2001)

The KANTOO MT System: Controlled Language Checker and Lexical Maintenance Tool. - Teruko Mitamura; Eric Nyberg; Kathryn L. Baker; Peter A. Cramer; Jeongwoo Ko; David Svoboda; Michael Duggan (AMTA, 2002)

Deriving Semantic Knowledge from Descriptive Texts Using an MT System. - Eric Nyberg; Teruko Mitamura; Kathryn L. Baker; David Svoboda; Brian Peterson; Jennifer Williams (AMTA, 2002)

The JAVELIN Question-Answering System at TREC 2002. - Eric Nyberg; Teruko Mitamura; Jaime G. Carbonell; James P. Callan; Kevyn Collins-Thompson; Krzysztof Czuba; Michael Duggan; Laurie Hiyakumoto; N. Hu; Yifen Huang; Jeongwoo Ko; Lucian Vlad Lita; et al. (TREC, 2002)

Spherical Object Reconstruction Using Simplex Meshes from Sparse Data. - Pavel Matula; David Svoboda (DGCI, 2003)

Tissue Reconstruction Based on Deformation of Dual Simplex Meshes. - David Svoboda; Pavel Matula (DGCI, 2003)

Source language diagnostics for MT. - Teruko Mitamura; Kathryn Baker; David Svoboda; Eric Nyberg (MTSummit, 2003)

The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning. - Eric Nyberg; Teruko Mitamura; James P. Callan; Jaime G. Carbonell; Robert E. Frederking; Kevyn Collins-Thompson; Laurie Hiyakumoto; Yifen Huang; Curtis Huttenhower; Scott Judy; Jeongwoo Ko; Anna Kupsc; et al. (TREC, 2003)

Statistical techniques for edge detection in histological images. - David Svoboda; Ian Williams 001; Nicholas Bowring; Elizabeth Guest (VISAPP (1), 2006)

On Simulating 3D Fluorescent Microscope Images. - David Svoboda; Marek Kasík; Martin Maska; Jan Hubený; Stanislav Stejskal; Michal Zimmermann (CAIP, 2007)

A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. - Martin Maska; Jan Hubený; David Svoboda; Michal Kozubek 001 (ISVC (2), 2007)

Statistical edge detection of concealed weapons using artificial neural networks. - Ian Williams 001; David Svoboda; Nicholas Bowring; Elizabeth Guest (Image Processing: Algorithms and Systems, 2008)

As-If Infinitely Ranged Integer Model. - Roger B. Dannenberg; Will Dormann; David Keaton; Robert C. Seacord; David Svoboda; Alex Volkovitsky; Timothy Wilson; Thomas Plum 003 (ISSRE, 2010)

A Novel Performance Metric for Grey-scale Edge Detection. - Ian Williams 001; David Svoboda; Nicholas Bowring (VISAPP (1), 2010)

Efficient Computation of Convolution of Huge Images. - David Svoboda (ICIAP (1), 2011)

Generation of 3D Digital Phantoms of Colon Tissue. - David Svoboda; Ondrej Homola; Stanislav Stejskal (ICIAR (2), 2011)

Convolution of large 3D images on GPU and its decomposition. - Pavel Karas; David Svoboda (EURASIP J. Adv. Signal Process., 2011)

Extension of Tamura Texture Features for 3D Fluorescence Microscopy. - Tomás Majtner; David Svoboda (3DIMPVT, 2012)

GPU Optimization of Convolution for Large 3-D Real Images. - Pavel Karas; David Svoboda; Pavel Zemcík (ACIVS, 2012)

Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. - David Svoboda; Vladimír Ulman (ICIAR (2), 2012)

Deconvolution of Huge 3-D Images: Parallelization Strategies on a Multi-GPU System. - Pavel Karas; Michal Kuderjavý; David Svoboda (ICA3PP (1), 2013)

Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations. - David Svoboda; Vladimír Ulman (ICIAP (2), 2013)

Pointer Ownership Model. - David Svoboda; Lutz Wrage (HICSS, 2014)

Texture analysis using 3D Gabor features and 3D MPEG-7 Edge Histogram descriptor in fluorescence microscopy. - Tomás Majtner; David Svoboda (IC3D, 2014)

On proper simulation of phenomena influencing image formation in fluorescence microscopy. - David Svoboda; Vladimír Ulman; Ludek Matyska; Martin Maska; Jan Bella; Stanislav Stejskal (ICIP, 2014)

RSURF - The Efficient Texture-Based Descriptor for Fluorescence Microscopy Images of HEP-2 Cells. - Tomás Majtner; Roman Stoklasa; David Svoboda (ICPR, 2014)

Comparison of 3D Texture-Based Image Descriptors in Fluorescence Microscopy. - Tomás Majtner; David Svoboda (IWCIA, 2014)

A benchmark for comparison of cell tracking algorithms. - Martin Maska; Vladimír Ulman; David Svoboda; Pavel Matula; Petr Matula; Cristina Ederra; Ainhoa Urbiola; Tomás España; Subramanian Venkatesan 001; Deepak M. W. Balak; Pavel Karas; Tereza Bolcková; et al. (Bioinform., 2014)

A performance evaluation of statistical tests for edge detection in textured images. - Ian Williams 001; Nicholas Bowring; David Svoboda (Comput. Vis. Image Underst., 2014)

Efficient k-NN based HEp-2 cells classifier. - Roman Stoklasa; Tomás Majtner; David Svoboda (Pattern Recognit., 2014)

TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells. - Vladimír Ulman; Zoltán Orémus; David Svoboda (ICIAP (1), 2015)

On proper simulation of chromatin structure in static images as well as in time-lapse sequences in fluorescence microscopy. - David Svoboda; Vladimír Ulman; Igor Peterlík (ISBI, 2015)

Vascular network formation in silico using the extended cellular potts model. - David Svoboda; Vladimír Ulman; Peter Kovác; Barbara Salingova; Lenka Tesarová; Irena K. Koutna; Petr Matula (ICIP, 2016)

Avoiding Insecure C++ - How to Avoid Common C++ Security Vulnerabilities. - Aaron Ballman; David Svoboda (SecDev, 2016)

Beyond errno: Error Handling in "C". - David Svoboda (SecDev, 2016)

Static Analysis Alert Audits: Lexicon & Rules. - David Svoboda; Lori Flynn; Will Snavely (SecDev, 2016)

Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia. - Dmitry V. Sorokin; Igor Peterlík; Vladimír Ulman; David Svoboda; Martin Maska (ISBI, 2017)

Multimodal Simulations in Live Cell Imaging. - David Svoboda; Michal Kozubek 001 (SASHIMI@MICCAI, 2017)

Hands-On Tutorial: Auditing Static Analysis Alerts Using a Lexicon & Rules. - Lori Flynn; David Svoboda; William Snavely (SecDev, 2017)

FTutor: An interactive guide to the fundamentals of frequency analysis. - Petr Seckár; David Svoboda (Comput. Appl. Eng. Educ., 2017)

MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy. - David Svoboda; Vladimír Ulman (IEEE Trans. Medical Imaging, 2017)

Visual and Quantitative Comparison of Real and Simulated Biomedical Image Data. - Tereza Necasová; David Svoboda (ECCV Workshops (6), 2018)

Prioritizing alerts from multiple static analysis tools, using classification models. - Lori Flynn; William Snavely; David Svoboda; Nathan M. VanHoudnos; Richard Qin; Jennifer Burns; David Zubrow; Robert Stoddard; Guillermo Marce-Santurio (SQUADE@ICSE, 2018)

Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. - Igor Peterlík; David Svoboda; Vladimír Ulman; Dmitry V. Sorokin; Martin Maska (SASHIMI@MICCAI, 2018)

Tubular Network Formation Process Using 3D Cellular Potts Model. - David Svoboda; Tereza Necasová; Lenka Tesarová; Pavel Simara (SASHIMI@MICCAI, 2018)

Detecting Leaks of Sensitive Data Due to Stale Reads. - Will Snavely; William Klieber; Ryan Steele; David Svoboda; Andrew Kotov (SecDev, 2018)

Editorial. - Michael Gabbay 001; Prokop Sousedík; David Svoboda (FLAP, 2018)

Are Ante Rem Structuralists Descriptivist Or Revisionist Metaphysicians? How We Speak About Numbers. - Prokop Sousedík; David Svoboda (FLAP, 2018)

FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells With Growing and Branching Filopodia. - Dmitry V. Sorokin; Igor Peterlík; Vladimír Ulman; David Svoboda; Tereza Necasová; Katsiarina Morgaenko; Lívia Eiselleová; Lenka Tesarová; Martin Maska (IEEE Trans. Medical Imaging, 2018)

On Generative Modeling of Cell Shape Using 3D GANs. - David Wiesner; Tereza Necasová; David Svoboda (ICIAP (2), 2019)

Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. - Martin Maska; Tereza Necasová; David Wiesner; Dmitry V. Sorokin; Igor Peterlík; Vladimír Ulman; David Svoboda (ICIP, 2019)

CytoPacq: a web-interface for simulating multi-dimensional cell imaging. - David Wiesner; David Svoboda; Martin Maska; Michal Kozubek 001 (Bioinform., 2019)

Image-Based Simulations of Tubular Network Formation. - David Svoboda; Tereza Necasová (ISBI, 2020)

Automated Code Repair to Ensure Spatial Memory Safety. - William Klieber; Ruben Martins; Ryan Steele; Matt Churilla; Mike McCall; David Svoboda (APR@ICSE, 2021)

Transfer Learning in Optical Microscopy. - Marián Kozlovský; David Wiesner; David Svoboda (SASHIMI@MICCAI, 2021)

Hands-on Tutorial: How Exploitable is Insecure C Code? - David Svoboda (SecDev, 2021)

Implicit Neural Representations for Generative Modeling of Living Cell Shapes. - David Wiesner; Julian Suk; Sven Dummer; David Svoboda; Jelmer M. Wolterink (MICCAI (4), 2022)

COMPYDA: An Online Tool for Verifying the Similarity of Image Datasets. - Tereza Necasová; Daniel Múcka; David Svoboda (ISBI, 2024)

Generative modeling of living cells with SO(3)-equivariant implicit neural representations. - David Wiesner; Julian Suk; Sven Dummer; Tereza Necasová; Vladimír Ulman; David Svoboda; Jelmer M. Wolterink (Medical Image Anal., 2024)