Rapid Simultaneous Mapping of T2 and T2* by Multiple Acquisition of Spin and Gradient Echoes Using Interleaved Echo Planar Imaging (MASAGE-IEPI). - David L. Thomas; Mark F. Lythgoe; David G. Gadian; Roger J. Ordidge (NeuroImage, 2002)

Improving whole brain structural MRI at 4.7 Tesla using 4 irregularly shaped receiver coils. - David W. Carmichael; David L. Thomas; Enrico De Vita; María A. Fernández-Seara; Navjeet Chhina; Mark Cooper; Colin Sunderland; Chris Randell; Robert Turner; Roger J. Ordidge (NeuroImage, 2006)

Inferring Viral Dynamics in Chronically HCV Infected Patients from the Spatial Distribution of Infected Hepatocytes. - Frederik Graw; Ashwin Balagopal; Abraham J. Kandathil; Stuart C. Ray; David L. Thomas; Ruy M. Ribeiro; Alan S. Perelson (PLoS Comput. Biol., 2014)

Extending a Model of Monophonic Hierarchical Music Analysis to Homophony. - Phillip B. Kirlin; David L. Thomas (ISMIR, 2015)

Optimisation of Arterial Spin Labelling Using Bayesian Experimental Design. - David Owen 001; Andrew Melbourne; David Thomas 002; Enrico De Vita; Jonathan D. Rohrer; Sébastien Ourselin (MICCAI (3), 2016)

Anatomy-Driven Modelling of Spatial Correlation for Regularisation of Arterial Spin Labelling Images. - David Owen 001; Andrew Melbourne; Zach Eaton-Rosen; David Thomas 002; Neil Marlow; Jonathan D. Rohrer; Sébastien Ourselin (MICCAI (2), 2017)

Short Acquisition Time PET Quantification Using MRI-Based Pharmacokinetic Parameter Synthesis. - Catherine J. Scott; Jieqing Jiao; M. Jorge Cardoso; Andrew Melbourne; Enrico De Vita; David Thomas 002; Ninon Burgos; Pawel Markiewicz; Jonathan M. Schott; Brian F. Hutton; Sébastien Ourselin (MICCAI (2), 2017)

Deep Convolutional Filtering for Spatio-Temporal Denoising and Artifact Removal in Arterial Spin Labelling MRI. - David Owen 001; Andrew Melbourne; Zach Eaton-Rosen; David L. Thomas; Neil Marlow; Jonathan D. Rohrer; Sébastien Ourselin (MICCAI (1), 2018)

Cardiac Cycle Estimation for BOLD-fMRI. - Michael Hütel; Andrew Melbourne; David L. Thomas; Sébastien Ourselin (MICCAI (3), 2018)

Quantifying multiple sclerosis pathology in post mortem spinal cord using MRI. - K. Schmierer; Amy R. McDowell; N. Petrova; Daniele Carassiti; David Thomas 002; Marc E. Miquel (NeuroImage, 2018)

Hierarchical Joint Registration of Tissue Blocks With Soft Shape Constraints For Large-Scale Histology of The Human Brain. - Matteo Mancini; Shauna Crampsie; David L. Thomas; Zane Jaunmuktane; Janice L. Holton; Juan Eugenio Iglesias (ISBI, 2019)

Physics-Informed Brain MRI Segmentation. - Pedro Borges; Carole H. Sudre; Thomas Varsavsky; David Thomas 002; Ivana Drobnjak; Sébastien Ourselin; M. Jorge Cardoso (SASHIMI@MICCAI, 2019)

Investigating the oxygenation of brain arteriovenous malformations using quantitative susceptibility mapping. - Emma Biondetti; Alvaro Rojas-Villabona; Magdalena J. Sokolska; Francesca Benedetta Pizzini; Hans Rolf Jäger; David L. Thomas; Karin Shmueli (NeuroImage, 2019)

Tractography-based parcellation does not provide strong evidence of anatomical organisation within the thalamus. - Jonathan D. Clayden; David L. Thomas; Alexander Kraskov (NeuroImage, 2019)

Non-invasive MRI of brain clearance pathways using multiple echo time arterial spin labelling: an aquaporin-4 study. - Yolanda Ohene; Ian F. Harrison; Payam Nahavandi; Ozama Ismail; Eleanor V. Bird; Ole Petter Ottersen; Erlend A. Nagelhus; David L. Thomas; Mark F. Lythgoe; Jack A. Wells (NeuroImage, 2019)

The Role of MRI Physics in Brain Segmentation CNNs: Achieving Acquisition Invariance and Instructive Uncertainties. - Pedro Borges; Richard Shaw; Thomas Varsavsky; Kerstin Kläser 002; David Thomas 002; Ivana Drobnjak; Sébastien Ourselin; Manuel Jorge Cardoso (SASHIMI@MICCAI, 2021)

Investigating the effect of flow compensation and quantitative susceptibility mapping method on the accuracy of venous susceptibility measurement. - Ronja C. Berg; Christine Preibisch; David L. Thomas; Karin Shmueli; Emma Biondetti (NeuroImage, 2021)

Uncertainty analysis of MR-PET image registration for precision neuro-PET imaging. - Pawel J. Markiewicz; Julian C. Matthews; John Ashburner; David M. Cash; David L. Thomas; Enrico De Vita; Anna Barnes; M. Jorge Cardoso; Marc Modat; Richard Brown 004; Kris Thielemans; Casper O. da Costa-Luis; et al. (NeuroImage, 2021)

Not all voxels are created equal: Reducing estimation bias in regional NODDI metrics using tissue-weighted means. - Christopher S. Parker; Tom Veale; Martina Bocchetta; C. F. Slattery; Ian B. Malone; David L. Thomas; Jonathan M. Schott; David M. Cash; Hui Zhang 005 (NeuroImage, 2021)

Pharmacological MRI with Simultaneous Measurement of Cerebral Perfusion and Blood-Cerebrospinal Fluid Barrier Function using Interleaved Echo-Time Arterial Spin Labelling. - Charith Perera; Ian F. Harrison; Mark F. Lythgoe; David L. Thomas; Jack A. Wells (NeuroImage, 2021)

Ultra-long-TE arterial spin labeling reveals rapid and brain-wide blood-to-CSF water transport in humans. - Leonie Petitclerc; Lydiane Hirschler; Jack A. Wells; David L. Thomas; Marianne A. A. van Walderveen; Mark A. van Buchem; Matthias J. P. van Osch (NeuroImage, 2021)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

Acquisition-invariant brain MRI segmentation with informative uncertainties. - Pedro Borges; Richard Shaw; Thomas Varsavsky; Kerstin Kläser 002; David Thomas 002; Ivana Drobnjak; Sébastien Ourselin; M. Jorge Cardoso (Medical Image Anal., 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)