BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments. - Mikita Suyama; David Torrents; Peer Bork (Bioinform., 2004)

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. - Mikita Suyama; David Torrents; Peer Bork (Nucleic Acids Res., 2006)

Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes. - Mikita Suyama; Eoghan D. Harrington; Peer Bork; David Torrents (PLoS Comput. Biol., 2006)

DNAlive: a tool for the physical analysis of DNA at the genomic scale. - Josep Ramón Goñi; Carlos Fenollosa; Alberto Pérez; David Torrents; Modesto Orozco (Bioinform., 2008)

ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites. - Santi González; Bàrbara Montserrat-Sentís; Friman Sánchez; Montserrat Puiggròs; Enrique Blanco; Alex Ramírez; David Torrents (Bioinform., 2012)

Addendum: Enterotypes of the human gut microbiome. - Manimozhiyan Arumugam; Jeroen Raes; Eric Pelletier; Denis Le Paslier; Takuji Yamada; Daniel R. Mende; Gabriel R. Fernandes; Julien Tap; Thomas Brüls; Jean-Michel Batto; Marcelo Bertalan; Natalia Borruel; et al. (Nat., 2014)

Random Forest as a Tumour Genetic Marker Extractor. - Raquel Pérez-Arnal; Dario Garcia-Gasulla; David Torrents; Ferran Parés; Ulises Cortés; Jesús Labarta; Eduard Ayguadé (CCIA, 2019)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

Guidance framework. - Marta Guindo-Martínez; Ramon Amela Milian; Silvia Bonàs-Guarch; Montserrat Puiggròs; Cecilia Salvoro; Irene Miguel-Escalada; Caitlin E. Carey; Joanne B. Cole; Sina Rüeger; Elizabeth G. Atkinson; Aaron Leong; Friman Sanchez; et al. (Zenodo, 2021)

Challenges and Opportunities for RISC-V Architectures Towards Genomics-Based Workloads. - Gonzalo Gomez-Sanchez; Aaron Call; Xavier Teruel; Lorena Alonso; Ignasi Moran; Miguel Angel Perez; David Torrents; Josep Lluís Berral (ISC Workshops, 2023)