A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. - Dong-Guk Shin; John Bluis; Yoo Ah Kim; Winfried Krueger; Jeffrey Maddox; Ravi Nori; Nathan Viniconis; Hsin-Wei Wang; Alan Wong; David W. Rowe (BIBE, 2006)

Meta Analysis of Microarray Data Using Gene Regulation Pathways. - Saira Ali Kazmi; Yoo-Ah Kim; Baikang Pei; Ravi Nori; David W. Rowe; Hsin-Wei Wang; Alan Wong; Dong-Guk Shin (BIBM, 2008)

Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information. - Baikang Pei; David W. Rowe; Dong-Guk Shin (BIBM, 2008)

PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. - Dong-Guk Shin; Seung-Hyun Hong; Pujan Joshi; Ravi Nori; Baikang Pei; Hsin-Wei Wang; Patrick Harrington; Lynn Kuo; Ivo Kalajzic; David W. Rowe (IJCBS, 2009)

Computing Consistency Between Microarray Data and Known Gene Regulation Relationships. - Dong-Guk Shin; Saira Ali Kazmi; Baikang Pei; Yoo-Ah Kim; Jeffrey Maddox; Ravi Nori; Alan Wong; Winfried Krueger; David W. Rowe (IEEE Trans. Inf. Technol. Biomed., 2009)

Learning Bayesian networks with integration of indirect prior knowledge. - Baikang Pei; David W. Rowe; Dong-Guk Shin (Int. J. Data Min. Bioinform., 2010)

A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. - Pujan Joshi; Baikang Pei; Seung-Hyun Hong; Ivo Kalajzic; Dong-Ju Shin; David W. Rowe; Dong-Guk Shin (BIBM, 2013)

A potential translational approach for bone tissue engineering through endochondral ossification. - Paiyz E. Mikael; Xiaonan Xin; Maria Urso; Xi Jiang; Liping Wang; Brian Barnes; Alexander C. Lichtler; David W. Rowe; Syam P. Nukavarapu (EMBC, 2014)

cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. - Honglin Wang; Pujan Joshi; Seung-Hyun Hong; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BIBM, 2020)

rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. - Honglin Wang; Pujan Joshi; Chenyu Zhang 007; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BCB, 2022)