Model-based image processing using snakes and mutual information. - Sebastian von Klinski; Claus Derz; David Weese; Thomas Tolxdorff (Image Processing, 2000)

Segment-based multiple sequence alignment. - Tobias Rausch; Anne-Katrin Emde; David Weese; Andreas Döring 001; Cédric Notredame; Knut Reinert (ECCB, 2008)

Efficient String Mining under Constraints Via the Deferred Frequency Index. - David Weese; Marcel H. Schulz (ICDM, 2008)

Fast and Adaptive Variable Order Markov Chain Construction. - Marcel H. Schulz; David Weese; Tobias Rausch; Andreas Döring 001; Knut Reinert; Martin Vingron (WABI, 2008)

SeqAn An efficient, generic C++ library for sequence analysis. - Andreas Döring 001; David Weese; Tobias Rausch; Knut Reinert (BMC Bioinform., 2008)

A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. - Tobias Rausch; Sergey Koren; Gennady Denisov; David Weese; Anne-Katrin Emde; Andreas Döring 001; Knut Reinert (Bioinform., 2009)

MicroRazerS: rapid alignment of small RNA reads. - Anne-Katrin Emde; Marcel Grunert; David Weese; Knut Reinert; Silke R. Sperling (Bioinform., 2010)

A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping. - Manuel Holtgrewe; Anne-Katrin Emde; David Weese; Knut Reinert (BMC Bioinform., 2011)

STELLAR: fast and exact local alignments. - Birte Kehr; David Weese; Knut Reinert (BMC Bioinform., 2011)

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS. - Anne-Katrin Emde; Marcel H. Schulz; David Weese; Ruping Sun; Martin Vingron; Vera M. Kalscheuer; Stefan A. Haas; Knut Reinert (Bioinform., 2012)

RazerS 3: Faster, fully sensitive read mapping. - David Weese; Manuel Holtgrewe; Knut Reinert (Bioinform., 2012)

Fast and sensitive read mapping with approximate seeds and multiple backtracking - Enrico Siragusa; David Weese; Knut Reinert (CoRR, 2012)

Scalable string similarity search/join with approximate seeds and multiple backtracking. - Enrico Siragusa; David Weese; Knut Reinert (EDBT/ICDT Workshops, 2013)

Indices and Applications in High-Throughput Sequencing. - David Weese (2013)

Journaled string tree - a scalable data structure for analyzing thousands of similar genomes on your laptop. - René Rahn; David Weese; Knut Reinert (Bioinform., 2014)

Fiona: a parallel and automatic strategy for read error correction. - Marcel H. Schulz; David Weese; Manuel Holtgrewe; Viktoria Dimitrova; Sijia Niu; Knut Reinert; Hugues Richard (Bioinform., 2014)

CIDANE: Comprehensive Isoform Discovery and Abundance Estimation. - Stefan Canzar; Sandro Andreotti; David Weese; Knut Reinert; Gunnar W. Klau (RECOMB, 2015)

Full-Text Indexes for High-Throughput Sequencing. - David Weese; Enrico Siragusa (Algorithms for Next-Generation Sequencing Data, 2017)

DNA-Seq Error Correction Based on Substring Indices. - David Weese; Marcel H. Schulz; Hugues Richard (Algorithms for Next-Generation Sequencing Data, 2017)

Using Wearable Sensors in Stroke Rehabilitation. - Justin Amadeus Albert; Lin Zhou; Kristina Kirsten; Nurcennet Kaynak; Torsten Rackoll; Tim Walz; David Weese; Rok Kos; Alexander Heinrich Nave; Bert Arnrich (iWOAR, 2024)